Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2884 and Shewana3_2885 are separated by 56 nucleotides Shewana3_2885 and xni are separated by 14 nucleotides xni and Shewana3_2887 are separated by 110 nucleotides
Shewana3_2884: Shewana3_2884 - diguanylate cyclase (RefSeq), at 3,451,132 to 3,452,688
_2884
Shewana3_2885: Shewana3_2885 - hypothetical protein (RefSeq), at 3,452,745 to 3,454,100
_2885
Shewana3_2886: xni - exonuclease IX (RefSeq), at 3,454,115 to 3,454,897
xni
Shewana3_2887: Shewana3_2887 - hypothetical protein (RefSeq), at 3,455,008 to 3,455,436
_2887
Position (kb)
3452
3453
3454
3455 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3451.928 kb on - strand, within Shewana3_2884 at 3452.054 kb on + strand, within Shewana3_2884 at 3452.078 kb on + strand, within Shewana3_2884 at 3452.086 kb on - strand, within Shewana3_2884 at 3452.095 kb on - strand, within Shewana3_2884 at 3452.135 kb on + strand, within Shewana3_2884 at 3452.257 kb on + strand, within Shewana3_2884 at 3452.291 kb on - strand, within Shewana3_2884 at 3452.405 kb on + strand, within Shewana3_2884 at 3452.448 kb on + strand, within Shewana3_2884 at 3452.476 kb on - strand, within Shewana3_2884 at 3452.586 kb on + strand at 3452.594 kb on - strand at 3452.594 kb on - strand at 3452.640 kb on + strand at 3452.879 kb on + strand at 3452.887 kb on - strand, within Shewana3_2885 at 3452.962 kb on + strand, within Shewana3_2885 at 3453.020 kb on + strand, within Shewana3_2885 at 3453.074 kb on + strand, within Shewana3_2885 at 3453.082 kb on + strand, within Shewana3_2885 at 3453.090 kb on - strand, within Shewana3_2885 at 3453.210 kb on - strand, within Shewana3_2885 at 3453.367 kb on + strand, within Shewana3_2885 at 3453.475 kb on - strand, within Shewana3_2885 at 3453.596 kb on - strand, within Shewana3_2885 at 3453.840 kb on - strand, within Shewana3_2885 at 3454.022 kb on + strand at 3454.147 kb on - strand at 3454.173 kb on + strand at 3454.205 kb on - strand, within xni at 3454.335 kb on - strand, within xni at 3454.362 kb on + strand, within xni at 3454.381 kb on + strand, within xni at 3454.502 kb on + strand, within xni at 3454.510 kb on - strand, within xni at 3454.726 kb on + strand, within xni at 3454.883 kb on - strand at 3455.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,451,928 - Shewana3_2884 0.51 -0.2 3,452,054 + Shewana3_2884 0.59 -1.0 3,452,078 + Shewana3_2884 0.61 +1.2 3,452,086 - Shewana3_2884 0.61 -0.4 3,452,095 - Shewana3_2884 0.62 +0.6 3,452,135 + Shewana3_2884 0.64 -0.7 3,452,257 + Shewana3_2884 0.72 +0.2 3,452,291 - Shewana3_2884 0.74 -3.2 3,452,405 + Shewana3_2884 0.82 +0.7 3,452,448 + Shewana3_2884 0.85 +2.0 3,452,476 - Shewana3_2884 0.86 -0.5 3,452,586 + +0.3 3,452,594 - +0.4 3,452,594 - -0.8 3,452,640 + -2.7 3,452,879 + +1.2 3,452,887 - Shewana3_2885 0.10 -1.3 3,452,962 + Shewana3_2885 0.16 -0.4 3,453,020 + Shewana3_2885 0.20 -1.1 3,453,074 + Shewana3_2885 0.24 +0.1 3,453,082 + Shewana3_2885 0.25 -0.3 3,453,090 - Shewana3_2885 0.25 +1.3 3,453,210 - Shewana3_2885 0.34 -1.9 3,453,367 + Shewana3_2885 0.46 +0.2 3,453,475 - Shewana3_2885 0.54 +0.3 3,453,596 - Shewana3_2885 0.63 +1.2 3,453,840 - Shewana3_2885 0.81 +1.8 3,454,022 + -0.7 3,454,147 - -0.6 3,454,173 + -0.3 3,454,205 - xni Shewana3_2886 0.11 +2.2 3,454,335 - xni Shewana3_2886 0.28 -3.6 3,454,362 + xni Shewana3_2886 0.32 -0.4 3,454,381 + xni Shewana3_2886 0.34 -0.6 3,454,502 + xni Shewana3_2886 0.49 +1.2 3,454,510 - xni Shewana3_2886 0.50 +0.0 3,454,726 + xni Shewana3_2886 0.78 +1.3 3,454,883 - -1.3 3,455,090 - +2.2
Or see this region's nucleotide sequence