Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purU and Shewana3_2822 are separated by 129 nucleotides Shewana3_2822 and Shewana3_2823 are separated by 74 nucleotides Shewana3_2823 and Shewana3_2824 are separated by 448 nucleotides
Shewana3_2821: purU - formyltetrahydrofolate deformylase (RefSeq), at 3,369,927 to 3,370,829
purU
Shewana3_2822: Shewana3_2822 - PTS system, glucose-like IIB subunint (RefSeq), at 3,370,959 to 3,372,317
_2822
Shewana3_2823: Shewana3_2823 - flavodoxin (RefSeq), at 3,372,392 to 3,372,856
_2823
Shewana3_2824: Shewana3_2824 - tRNA pseudouridine synthase C (RefSeq), at 3,373,305 to 3,374,159
_2824
Position (kb)
3370
3371
3372
3373 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3369.970 kb on + strand at 3370.084 kb on - strand, within purU at 3370.258 kb on + strand, within purU at 3370.266 kb on - strand, within purU at 3370.538 kb on - strand, within purU at 3370.538 kb on - strand, within purU at 3370.591 kb on + strand, within purU at 3370.975 kb on + strand at 3370.983 kb on + strand at 3371.009 kb on - strand at 3371.014 kb on + strand at 3371.035 kb on + strand at 3371.043 kb on - strand at 3371.096 kb on + strand, within Shewana3_2822 at 3371.096 kb on + strand, within Shewana3_2822 at 3371.096 kb on + strand, within Shewana3_2822 at 3371.096 kb on + strand, within Shewana3_2822 at 3371.096 kb on + strand, within Shewana3_2822 at 3371.104 kb on - strand, within Shewana3_2822 at 3371.104 kb on - strand, within Shewana3_2822 at 3371.104 kb on - strand, within Shewana3_2822 at 3371.166 kb on + strand, within Shewana3_2822 at 3371.194 kb on - strand, within Shewana3_2822 at 3371.321 kb on + strand, within Shewana3_2822 at 3371.503 kb on - strand, within Shewana3_2822 at 3371.798 kb on + strand, within Shewana3_2822 at 3371.798 kb on + strand, within Shewana3_2822 at 3372.122 kb on + strand, within Shewana3_2822 at 3372.249 kb on + strand at 3372.292 kb on - strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3373.117 kb on - strand at 3373.222 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,369,970 + -0.1 3,370,084 - purU Shewana3_2821 0.17 -1.3 3,370,258 + purU Shewana3_2821 0.37 -2.1 3,370,266 - purU Shewana3_2821 0.38 +0.4 3,370,538 - purU Shewana3_2821 0.68 +0.5 3,370,538 - purU Shewana3_2821 0.68 -0.0 3,370,591 + purU Shewana3_2821 0.74 +1.2 3,370,975 + +1.2 3,370,983 + -0.6 3,371,009 - -0.1 3,371,014 + +0.4 3,371,035 + +2.2 3,371,043 - +2.9 3,371,096 + Shewana3_2822 0.10 -1.6 3,371,096 + Shewana3_2822 0.10 -0.5 3,371,096 + Shewana3_2822 0.10 +1.2 3,371,096 + Shewana3_2822 0.10 -1.0 3,371,096 + Shewana3_2822 0.10 -1.4 3,371,104 - Shewana3_2822 0.11 -0.6 3,371,104 - Shewana3_2822 0.11 -0.3 3,371,104 - Shewana3_2822 0.11 -0.1 3,371,166 + Shewana3_2822 0.15 +0.6 3,371,194 - Shewana3_2822 0.17 -0.4 3,371,321 + Shewana3_2822 0.27 -1.2 3,371,503 - Shewana3_2822 0.40 -0.9 3,371,798 + Shewana3_2822 0.62 -0.8 3,371,798 + Shewana3_2822 0.62 +0.6 3,372,122 + Shewana3_2822 0.86 +2.2 3,372,249 + -0.1 3,372,292 - +0.9 3,372,818 + +2.2 3,372,818 + +0.6 3,372,818 + +0.6 3,372,818 + -0.8 3,372,818 + +1.2 3,372,818 + +2.2 3,372,818 + -0.1 3,372,818 + +0.6 3,372,818 + +1.2 3,372,818 + +1.2 3,372,818 + -0.9 3,372,818 + -0.1 3,372,826 - +0.3 3,372,826 - +2.3 3,372,826 - +0.6 3,372,826 - -1.3 3,372,826 - +0.1 3,372,826 - +0.5 3,372,826 - +1.2 3,372,826 - -0.2 3,372,826 - +0.8 3,372,826 - +0.5 3,372,826 - -1.5 3,373,117 - -0.0 3,373,222 + -1.4
Or see this region's nucleotide sequence