Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2797
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,338,987 | + | Shewana3_2796 | 0.80 | -1.1 | |
3,339,119 | - | Shewana3_2796 | 0.87 | -0.1 | |
3,339,152 | - | Shewana3_2796 | 0.89 | -1.4 | |
3,339,195 | + | -1.7 | |||
3,339,340 | - | +0.0 | |||
3,339,380 | + | +2.2 | |||
3,339,466 | + | +0.9 | |||
3,339,534 | + | -0.4 | |||
3,339,607 | + | -0.5 | |||
3,339,627 | + | -1.6 | |||
3,339,638 | + | -1.5 | |||
3,339,856 | + | Shewana3_2797 | 0.12 | +0.6 | |
3,340,118 | - | Shewana3_2797 | 0.25 | +0.9 | |
3,340,442 | - | Shewana3_2797 | 0.42 | -0.5 | |
3,340,502 | + | Shewana3_2797 | 0.45 | -0.6 | |
3,340,505 | - | Shewana3_2797 | 0.45 | -2.5 | |
3,340,510 | - | Shewana3_2797 | 0.45 | -0.1 | |
3,340,582 | + | Shewana3_2797 | 0.49 | +0.2 | |
3,341,164 | - | Shewana3_2797 | 0.79 | -0.8 | |
3,341,254 | + | Shewana3_2797 | 0.84 | +1.2 | |
3,341,289 | + | Shewana3_2797 | 0.85 | -0.8 | |
3,341,374 | + | Shewana3_2797 | 0.90 | -0.3 | |
3,341,429 | - | -2.5 | |||
3,341,530 | + | -1.3 | |||
3,341,623 | + | +1.1 | |||
3,341,745 | + | -1.5 | |||
3,341,885 | - | Shewana3_2798 | 0.16 | +0.2 | |
3,341,918 | + | Shewana3_2798 | 0.20 | +1.8 | |
3,342,055 | - | Shewana3_2798 | 0.35 | +0.6 | |
3,342,055 | - | Shewana3_2798 | 0.35 | +0.2 | |
3,342,371 | - | Shewana3_2798 | 0.71 | +0.6 |
Or see this region's nucleotide sequence