Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2790 and Shewana3_2791 are separated by 62 nucleotides Shewana3_2791 and Shewana3_2792 overlap by 11 nucleotides Shewana3_2792 and Shewana3_2793 are separated by 61 nucleotides
Shewana3_2790: Shewana3_2790 - fructokinase (RefSeq), at 3,330,001 to 3,330,921
_2790
Shewana3_2791: Shewana3_2791 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,330,984 to 3,331,790
_2791
Shewana3_2792: Shewana3_2792 - hypothetical protein (RefSeq), at 3,331,780 to 3,332,076
_2792
Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232
_2793
Position (kb)
3330
3331
3332 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3330.054 kb on - strand at 3330.117 kb on + strand, within Shewana3_2790 at 3330.125 kb on - strand, within Shewana3_2790 at 3330.325 kb on + strand, within Shewana3_2790 at 3330.421 kb on - strand, within Shewana3_2790 at 3330.624 kb on + strand, within Shewana3_2790 at 3331.004 kb on - strand at 3331.064 kb on - strand at 3331.165 kb on + strand, within Shewana3_2791 at 3331.173 kb on - strand, within Shewana3_2791 at 3331.916 kb on - strand, within Shewana3_2792 at 3332.130 kb on + strand at 3332.180 kb on - strand at 3332.211 kb on - strand at 3332.245 kb on - strand at 3332.278 kb on + strand, within Shewana3_2793 at 3332.431 kb on + strand, within Shewana3_2793 at 3332.639 kb on - strand, within Shewana3_2793 at 3332.644 kb on - strand, within Shewana3_2793 at 3332.653 kb on + strand, within Shewana3_2793 at 3332.688 kb on + strand, within Shewana3_2793 at 3332.732 kb on - strand, within Shewana3_2793
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,330,054 - +1.2 3,330,117 + Shewana3_2790 0.13 +2.2 3,330,125 - Shewana3_2790 0.13 +1.5 3,330,325 + Shewana3_2790 0.35 +2.2 3,330,421 - Shewana3_2790 0.46 -0.6 3,330,624 + Shewana3_2790 0.68 +1.2 3,331,004 - +3.1 3,331,064 - +0.7 3,331,165 + Shewana3_2791 0.22 -1.0 3,331,173 - Shewana3_2791 0.23 -1.4 3,331,916 - Shewana3_2792 0.46 -3.2 3,332,130 + -1.5 3,332,180 - +0.2 3,332,211 - -1.0 3,332,245 - -1.1 3,332,278 + Shewana3_2793 0.13 +0.6 3,332,431 + Shewana3_2793 0.27 +1.2 3,332,639 - Shewana3_2793 0.46 -1.5 3,332,644 - Shewana3_2793 0.46 +1.2 3,332,653 + Shewana3_2793 0.47 -0.7 3,332,688 + Shewana3_2793 0.50 +0.2 3,332,732 - Shewana3_2793 0.54 +0.9
Or see this region's nucleotide sequence