Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2786 and Shewana3_2787 are separated by 424 nucleotides Shewana3_2787 and Shewana3_2788 are separated by 112 nucleotides Shewana3_2788 and Shewana3_2789 are separated by 4 nucleotides
Shewana3_2786: Shewana3_2786 - LysR family transcriptional regulator (RefSeq), at 3,324,641 to 3,325,654
_2786
Shewana3_2787: Shewana3_2787 - decaheme cytochrome c (RefSeq), at 3,326,079 to 3,328,367
_2787
Shewana3_2788: Shewana3_2788 - hypothetical protein (RefSeq), at 3,328,480 to 3,329,154
_2788
Shewana3_2789: Shewana3_2789 - hypothetical protein (RefSeq), at 3,329,159 to 3,329,893
_2789
Position (kb)
3326
3327
3328
3329 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3325.263 kb on + strand, within Shewana3_2786 at 3325.271 kb on - strand, within Shewana3_2786 at 3325.271 kb on - strand, within Shewana3_2786 at 3325.412 kb on + strand, within Shewana3_2786 at 3325.448 kb on + strand, within Shewana3_2786 at 3325.815 kb on + strand at 3326.027 kb on + strand at 3326.298 kb on - strand at 3326.580 kb on + strand, within Shewana3_2787 at 3326.659 kb on + strand, within Shewana3_2787 at 3326.712 kb on + strand, within Shewana3_2787 at 3326.757 kb on + strand, within Shewana3_2787 at 3326.853 kb on + strand, within Shewana3_2787 at 3327.233 kb on - strand, within Shewana3_2787 at 3327.451 kb on - strand, within Shewana3_2787 at 3327.540 kb on + strand, within Shewana3_2787 at 3327.540 kb on + strand, within Shewana3_2787 at 3327.540 kb on + strand, within Shewana3_2787 at 3327.649 kb on - strand, within Shewana3_2787 at 3327.801 kb on + strand, within Shewana3_2787 at 3327.801 kb on + strand, within Shewana3_2787 at 3327.834 kb on + strand, within Shewana3_2787 at 3327.852 kb on + strand, within Shewana3_2787 at 3328.009 kb on - strand, within Shewana3_2787 at 3328.084 kb on + strand, within Shewana3_2787 at 3328.196 kb on + strand at 3328.598 kb on - strand, within Shewana3_2788 at 3328.833 kb on + strand, within Shewana3_2788 at 3328.963 kb on - strand, within Shewana3_2788 at 3328.975 kb on + strand, within Shewana3_2788 at 3328.983 kb on - strand, within Shewana3_2788 at 3329.019 kb on - strand, within Shewana3_2788 at 3329.067 kb on - strand, within Shewana3_2788 at 3329.116 kb on - strand at 3329.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,325,263 + Shewana3_2786 0.61 +2.2 3,325,271 - Shewana3_2786 0.62 +0.2 3,325,271 - Shewana3_2786 0.62 +2.2 3,325,412 + Shewana3_2786 0.76 +2.2 3,325,448 + Shewana3_2786 0.80 +0.6 3,325,815 + -0.8 3,326,027 + -0.4 3,326,298 - +0.6 3,326,580 + Shewana3_2787 0.22 +0.6 3,326,659 + Shewana3_2787 0.25 -0.2 3,326,712 + Shewana3_2787 0.28 +0.2 3,326,757 + Shewana3_2787 0.30 +0.0 3,326,853 + Shewana3_2787 0.34 +0.6 3,327,233 - Shewana3_2787 0.50 -1.0 3,327,451 - Shewana3_2787 0.60 -1.7 3,327,540 + Shewana3_2787 0.64 -2.8 3,327,540 + Shewana3_2787 0.64 -1.1 3,327,540 + Shewana3_2787 0.64 -0.6 3,327,649 - Shewana3_2787 0.69 +0.3 3,327,801 + Shewana3_2787 0.75 +0.2 3,327,801 + Shewana3_2787 0.75 +0.0 3,327,834 + Shewana3_2787 0.77 -0.9 3,327,852 + Shewana3_2787 0.77 -0.4 3,328,009 - Shewana3_2787 0.84 -1.3 3,328,084 + Shewana3_2787 0.88 -0.9 3,328,196 + +1.4 3,328,598 - Shewana3_2788 0.17 +0.1 3,328,833 + Shewana3_2788 0.52 -0.6 3,328,963 - Shewana3_2788 0.72 -1.6 3,328,975 + Shewana3_2788 0.73 +2.2 3,328,983 - Shewana3_2788 0.75 +1.3 3,329,019 - Shewana3_2788 0.80 -0.5 3,329,067 - Shewana3_2788 0.87 -2.0 3,329,116 - +2.8 3,329,167 + -1.0
Or see this region's nucleotide sequence