Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2766

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2764 and fabG are separated by 207 nucleotidesfabG and Shewana3_2766 are separated by 19 nucleotidesShewana3_2766 and Shewana3_2767 are separated by 100 nucleotides Shewana3_2764: Shewana3_2764 - hypothetical protein (RefSeq), at 3,303,121 to 3,303,363 _2764 Shewana3_2765: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 3,303,571 to 3,304,329 fabG Shewana3_2766: Shewana3_2766 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 3,304,349 to 3,305,251 _2766 Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503 _2767 Position (kb) 3304 3305 3306Strain fitness (log2 ratio) -2 -1 0 1 2at 3303.392 kb on - strandat 3303.642 kb on + strandat 3303.750 kb on + strand, within fabGat 3303.758 kb on - strand, within fabGat 3304.841 kb on + strand, within Shewana3_2766at 3304.849 kb on - strand, within Shewana3_2766at 3304.907 kb on + strand, within Shewana3_2766at 3304.908 kb on + strand, within Shewana3_2766at 3304.980 kb on - strand, within Shewana3_2766at 3305.067 kb on - strand, within Shewana3_2766at 3305.110 kb on + strand, within Shewana3_2766at 3305.143 kb on - strand, within Shewana3_2766at 3305.247 kb on - strandat 3305.416 kb on - strandat 3305.471 kb on - strand, within Shewana3_2767at 3305.510 kb on + strand, within Shewana3_2767at 3305.675 kb on - strand, within Shewana3_2767at 3305.704 kb on - strand, within Shewana3_2767at 3305.873 kb on - strand, within Shewana3_2767at 3305.978 kb on + strand, within Shewana3_2767at 3305.986 kb on - strand, within Shewana3_2767at 3306.124 kb on + strand, within Shewana3_2767at 3306.124 kb on + strand, within Shewana3_2767

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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3,303,392 - +1.2
3,303,642 + +0.6
3,303,750 + fabG Shewana3_2765 0.24 +0.6
3,303,758 - fabG Shewana3_2765 0.25 +0.6
3,304,841 + Shewana3_2766 0.54 +0.9
3,304,849 - Shewana3_2766 0.55 +2.3
3,304,907 + Shewana3_2766 0.62 -0.2
3,304,908 + Shewana3_2766 0.62 +0.2
3,304,980 - Shewana3_2766 0.70 +0.6
3,305,067 - Shewana3_2766 0.80 +0.1
3,305,110 + Shewana3_2766 0.84 -1.0
3,305,143 - Shewana3_2766 0.88 +1.6
3,305,247 - +0.1
3,305,416 - +1.8
3,305,471 - Shewana3_2767 0.10 -0.3
3,305,510 + Shewana3_2767 0.14 -0.1
3,305,675 - Shewana3_2767 0.28 +2.1
3,305,704 - Shewana3_2767 0.31 +1.9
3,305,873 - Shewana3_2767 0.45 +0.3
3,305,978 + Shewana3_2767 0.54 -1.9
3,305,986 - Shewana3_2767 0.55 +0.4
3,306,124 + Shewana3_2767 0.67 -1.0
3,306,124 + Shewana3_2767 0.67 +2.2

Or see this region's nucleotide sequence