Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2737 and Shewana3_2738 are separated by 245 nucleotides Shewana3_2738 and Shewana3_2739 are separated by 252 nucleotides Shewana3_2739 and Shewana3_2740 are separated by 125 nucleotides
Shewana3_2737: Shewana3_2737 - putative esterase (RefSeq), at 3,268,561 to 3,269,721
_2737
Shewana3_2738: Shewana3_2738 - hypothetical protein (RefSeq), at 3,269,967 to 3,270,791
_2738
Shewana3_2739: Shewana3_2739 - hypothetical protein (RefSeq), at 3,271,044 to 3,271,616
_2739
Shewana3_2740: Shewana3_2740 - hypothetical protein (RefSeq), at 3,271,742 to 3,272,140
_2740
Position (kb)
3269
3270
3271 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3269.291 kb on + strand, within Shewana3_2737 at 3269.291 kb on + strand, within Shewana3_2737 at 3269.398 kb on + strand, within Shewana3_2737 at 3269.415 kb on + strand, within Shewana3_2737 at 3269.423 kb on - strand, within Shewana3_2737 at 3269.423 kb on - strand, within Shewana3_2737 at 3269.430 kb on + strand, within Shewana3_2737 at 3269.478 kb on + strand, within Shewana3_2737 at 3269.538 kb on + strand, within Shewana3_2737 at 3269.721 kb on + strand at 3269.875 kb on + strand at 3270.247 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.480 kb on - strand, within Shewana3_2738 at 3270.527 kb on - strand, within Shewana3_2738 at 3270.865 kb on + strand at 3271.310 kb on + strand, within Shewana3_2739 at 3271.318 kb on - strand, within Shewana3_2739 at 3271.318 kb on - strand, within Shewana3_2739 at 3271.441 kb on - strand, within Shewana3_2739 at 3271.629 kb on - strand at 3271.638 kb on - strand at 3271.667 kb on + strand at 3271.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,269,291 + Shewana3_2737 0.63 -1.5 3,269,291 + Shewana3_2737 0.63 -0.8 3,269,398 + Shewana3_2737 0.72 +2.2 3,269,415 + Shewana3_2737 0.74 -0.4 3,269,423 - Shewana3_2737 0.74 +1.3 3,269,423 - Shewana3_2737 0.74 +2.2 3,269,430 + Shewana3_2737 0.75 +0.8 3,269,478 + Shewana3_2737 0.79 +1.6 3,269,538 + Shewana3_2737 0.84 -1.0 3,269,721 + -0.6 3,269,875 + -1.2 3,270,247 + Shewana3_2738 0.34 -0.8 3,270,372 + Shewana3_2738 0.49 +0.6 3,270,372 + Shewana3_2738 0.49 -1.1 3,270,372 + Shewana3_2738 0.49 +0.9 3,270,372 + Shewana3_2738 0.49 +0.2 3,270,372 + Shewana3_2738 0.49 -0.8 3,270,380 - Shewana3_2738 0.50 +1.0 3,270,380 - Shewana3_2738 0.50 -1.1 3,270,380 - Shewana3_2738 0.50 +0.2 3,270,480 - Shewana3_2738 0.62 -1.2 3,270,527 - Shewana3_2738 0.68 -1.1 3,270,865 + -2.3 3,271,310 + Shewana3_2739 0.46 -0.1 3,271,318 - Shewana3_2739 0.48 +1.8 3,271,318 - Shewana3_2739 0.48 -0.9 3,271,441 - Shewana3_2739 0.69 -1.9 3,271,629 - -0.4 3,271,638 - +1.2 3,271,667 + -0.1 3,271,667 + +1.2
Or see this region's nucleotide sequence