Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2734 and Shewana3_2735 are separated by 199 nucleotides Shewana3_2735 and Shewana3_2736 are separated by 60 nucleotides Shewana3_2736 and Shewana3_2737 are separated by 95 nucleotides
Shewana3_2734: Shewana3_2734 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,264,559 to 3,266,817
_2734
Shewana3_2735: Shewana3_2735 - ACT domain-containing protein (RefSeq), at 3,267,017 to 3,267,517
_2735
Shewana3_2736: Shewana3_2736 - hypothetical protein (RefSeq), at 3,267,578 to 3,268,465
_2736
Shewana3_2737: Shewana3_2737 - putative esterase (RefSeq), at 3,268,561 to 3,269,721
_2737
Position (kb)
3267
3268
3269 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3266.797 kb on - strand at 3267.114 kb on + strand, within Shewana3_2735 at 3267.114 kb on + strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.219 kb on + strand, within Shewana3_2735 at 3267.290 kb on - strand, within Shewana3_2735 at 3267.381 kb on - strand, within Shewana3_2735 at 3267.389 kb on - strand, within Shewana3_2735 at 3267.416 kb on + strand, within Shewana3_2735 at 3267.446 kb on - strand, within Shewana3_2735 at 3267.461 kb on + strand, within Shewana3_2735 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.795 kb on + strand, within Shewana3_2736 at 3267.803 kb on - strand, within Shewana3_2736 at 3267.828 kb on - strand, within Shewana3_2736 at 3268.048 kb on + strand, within Shewana3_2736 at 3268.163 kb on - strand, within Shewana3_2736 at 3268.194 kb on + strand, within Shewana3_2736 at 3268.194 kb on + strand, within Shewana3_2736 at 3268.271 kb on + strand, within Shewana3_2736 at 3268.279 kb on - strand, within Shewana3_2736 at 3268.561 kb on + strand at 3268.814 kb on + strand, within Shewana3_2737 at 3268.889 kb on - strand, within Shewana3_2737 at 3269.291 kb on + strand, within Shewana3_2737 at 3269.291 kb on + strand, within Shewana3_2737 at 3269.398 kb on + strand, within Shewana3_2737 at 3269.415 kb on + strand, within Shewana3_2737 at 3269.423 kb on - strand, within Shewana3_2737 at 3269.423 kb on - strand, within Shewana3_2737 at 3269.430 kb on + strand, within Shewana3_2737
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,266,797 - +0.4 3,267,114 + Shewana3_2735 0.19 +0.0 3,267,114 + Shewana3_2735 0.19 +0.6 3,267,122 - Shewana3_2735 0.21 -2.3 3,267,122 - Shewana3_2735 0.21 +1.2 3,267,122 - Shewana3_2735 0.21 -1.1 3,267,219 + Shewana3_2735 0.40 +0.9 3,267,290 - Shewana3_2735 0.54 -0.4 3,267,381 - Shewana3_2735 0.73 -0.1 3,267,389 - Shewana3_2735 0.74 -0.4 3,267,416 + Shewana3_2735 0.80 +1.2 3,267,446 - Shewana3_2735 0.86 -0.9 3,267,461 + Shewana3_2735 0.89 +1.0 3,267,679 + Shewana3_2736 0.11 -0.4 3,267,679 + Shewana3_2736 0.11 +0.6 3,267,679 + Shewana3_2736 0.11 -0.6 3,267,687 - Shewana3_2736 0.12 -0.3 3,267,687 - Shewana3_2736 0.12 -1.0 3,267,795 + Shewana3_2736 0.24 -0.1 3,267,803 - Shewana3_2736 0.25 -0.1 3,267,828 - Shewana3_2736 0.28 +0.6 3,268,048 + Shewana3_2736 0.53 -1.1 3,268,163 - Shewana3_2736 0.66 -1.1 3,268,194 + Shewana3_2736 0.69 -0.2 3,268,194 + Shewana3_2736 0.69 +0.0 3,268,271 + Shewana3_2736 0.78 -0.3 3,268,279 - Shewana3_2736 0.79 -1.3 3,268,561 + -1.2 3,268,814 + Shewana3_2737 0.22 +0.5 3,268,889 - Shewana3_2737 0.28 +0.6 3,269,291 + Shewana3_2737 0.63 -1.5 3,269,291 + Shewana3_2737 0.63 -0.8 3,269,398 + Shewana3_2737 0.72 +2.2 3,269,415 + Shewana3_2737 0.74 -0.4 3,269,423 - Shewana3_2737 0.74 +1.3 3,269,423 - Shewana3_2737 0.74 +2.2 3,269,430 + Shewana3_2737 0.75 +0.8
Or see this region's nucleotide sequence