Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2731 and Shewana3_2732 are separated by 127 nucleotides Shewana3_2732 and Shewana3_2733 are separated by 33 nucleotides Shewana3_2733 and Shewana3_2734 are separated by 59 nucleotides
Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861
_2731
Shewana3_2732: Shewana3_2732 - phosphate ABC transporter, ATPase subunit (RefSeq), at 3,261,989 to 3,262,807
_2732
Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499
_2733
Shewana3_2734: Shewana3_2734 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,264,559 to 3,266,817
_2734
Position (kb)
3262
3263
3264
3265 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3261.878 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3262.169 kb on - strand, within Shewana3_2732 at 3262.599 kb on - strand at 3263.093 kb on - strand, within Shewana3_2733 at 3263.223 kb on - strand, within Shewana3_2733 at 3263.260 kb on - strand, within Shewana3_2733 at 3263.314 kb on - strand, within Shewana3_2733 at 3263.314 kb on - strand, within Shewana3_2733 at 3263.314 kb on - strand, within Shewana3_2733 at 3263.425 kb on - strand, within Shewana3_2733 at 3263.689 kb on - strand, within Shewana3_2733 at 3264.201 kb on - strand, within Shewana3_2733 at 3264.576 kb on - strand at 3264.668 kb on - strand at 3264.743 kb on - strand at 3264.772 kb on - strand at 3265.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,261,878 - +0.4 3,261,930 - +0.8 3,261,930 - +1.9 3,261,930 - +1.3 3,262,169 - Shewana3_2732 0.22 +2.0 3,262,599 - -0.1 3,263,093 - Shewana3_2733 0.15 -0.1 3,263,223 - Shewana3_2733 0.23 -0.8 3,263,260 - Shewana3_2733 0.25 +0.7 3,263,314 - Shewana3_2733 0.29 +1.2 3,263,314 - Shewana3_2733 0.29 +1.1 3,263,314 - Shewana3_2733 0.29 +0.3 3,263,425 - Shewana3_2733 0.35 +2.1 3,263,689 - Shewana3_2733 0.51 +0.5 3,264,201 - Shewana3_2733 0.82 -0.2 3,264,576 - +0.1 3,264,668 - -2.1 3,264,743 - -0.7 3,264,772 - -1.3 3,265,256 - -0.8
Or see this region's nucleotide sequence