Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2720 and Shewana3_2721 are separated by 155 nucleotides Shewana3_2721 and Shewana3_2722 are separated by 52 nucleotides
Shewana3_2720: Shewana3_2720 - hypothetical protein (RefSeq), at 3,251,958 to 3,252,563
_2720
Shewana3_2721: Shewana3_2721 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,252,719 to 3,253,114
_2721
Shewana3_2722: Shewana3_2722 - LysR family transcriptional regulator (RefSeq), at 3,253,167 to 3,254,054
_2722
Position (kb)
3252
3253
3254 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3251.733 kb on - strand at 3251.772 kb on - strand at 3251.773 kb on + strand at 3251.815 kb on - strand at 3252.238 kb on + strand, within Shewana3_2720 at 3252.246 kb on - strand, within Shewana3_2720 at 3252.296 kb on - strand, within Shewana3_2720 at 3252.306 kb on - strand, within Shewana3_2720 at 3252.361 kb on - strand, within Shewana3_2720 at 3252.361 kb on - strand, within Shewana3_2720 at 3252.518 kb on - strand at 3252.540 kb on + strand at 3252.715 kb on + strand at 3252.740 kb on - strand at 3252.798 kb on - strand, within Shewana3_2721 at 3252.802 kb on - strand, within Shewana3_2721 at 3252.829 kb on - strand, within Shewana3_2721 at 3253.005 kb on + strand, within Shewana3_2721 at 3253.013 kb on - strand, within Shewana3_2721 at 3253.291 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.548 kb on - strand, within Shewana3_2722 at 3253.634 kb on - strand, within Shewana3_2722 at 3253.810 kb on + strand, within Shewana3_2722 at 3253.869 kb on + strand, within Shewana3_2722 at 3253.869 kb on + strand, within Shewana3_2722 at 3253.877 kb on - strand, within Shewana3_2722 at 3253.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,251,733 - +1.6 3,251,772 - -0.9 3,251,773 + +0.6 3,251,815 - +2.2 3,252,238 + Shewana3_2720 0.46 +2.2 3,252,246 - Shewana3_2720 0.48 -0.2 3,252,296 - Shewana3_2720 0.56 -1.7 3,252,306 - Shewana3_2720 0.57 +0.6 3,252,361 - Shewana3_2720 0.67 +0.3 3,252,361 - Shewana3_2720 0.67 +0.9 3,252,518 - -0.6 3,252,540 + -2.1 3,252,715 + -1.2 3,252,740 - -1.5 3,252,798 - Shewana3_2721 0.20 -1.7 3,252,802 - Shewana3_2721 0.21 -1.0 3,252,829 - Shewana3_2721 0.28 -1.3 3,253,005 + Shewana3_2721 0.72 +0.6 3,253,013 - Shewana3_2721 0.74 +0.2 3,253,291 + Shewana3_2722 0.14 -2.2 3,253,306 + Shewana3_2722 0.16 +1.4 3,253,306 + Shewana3_2722 0.16 +0.1 3,253,306 + Shewana3_2722 0.16 +1.1 3,253,306 + Shewana3_2722 0.16 -0.3 3,253,306 + Shewana3_2722 0.16 -0.3 3,253,306 + Shewana3_2722 0.16 -0.1 3,253,306 + Shewana3_2722 0.16 -0.8 3,253,314 - Shewana3_2722 0.17 -1.3 3,253,314 - Shewana3_2722 0.17 +3.3 3,253,314 - Shewana3_2722 0.17 +0.6 3,253,548 - Shewana3_2722 0.43 -0.4 3,253,634 - Shewana3_2722 0.53 -1.9 3,253,810 + Shewana3_2722 0.72 -0.6 3,253,869 + Shewana3_2722 0.79 -1.1 3,253,869 + Shewana3_2722 0.79 -0.3 3,253,877 - Shewana3_2722 0.80 -0.9 3,253,966 + -0.2
Or see this region's nucleotide sequence