Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2703 and Shewana3_2704 are separated by 47 nucleotides Shewana3_2704 and Shewana3_2705 are separated by 109 nucleotides Shewana3_2705 and Shewana3_2706 are separated by 171 nucleotides
Shewana3_2703: Shewana3_2703 - TonB-dependent receptor (RefSeq), at 3,230,269 to 3,233,124
_2703
Shewana3_2704: Shewana3_2704 - helix-turn-helix, type 11 domain-containing protein (RefSeq), at 3,233,172 to 3,233,870
_2704
Shewana3_2705: Shewana3_2705 - transcription activator, effector binding (RefSeq), at 3,233,980 to 3,234,429
_2705
Shewana3_2706: Shewana3_2706 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,234,601 to 3,234,984
_2706
Position (kb)
3233
3234 Strain fitness (log2 ratio)
-1
0
1
2 at 3232.235 kb on + strand, within Shewana3_2703 at 3232.238 kb on - strand, within Shewana3_2703 at 3232.375 kb on + strand, within Shewana3_2703 at 3232.383 kb on - strand, within Shewana3_2703 at 3232.383 kb on - strand, within Shewana3_2703 at 3232.383 kb on - strand, within Shewana3_2703 at 3232.383 kb on - strand, within Shewana3_2703 at 3232.415 kb on - strand, within Shewana3_2703 at 3232.608 kb on + strand, within Shewana3_2703 at 3232.656 kb on - strand, within Shewana3_2703 at 3232.814 kb on - strand, within Shewana3_2703 at 3232.869 kb on + strand at 3232.877 kb on - strand at 3233.020 kb on - strand at 3233.065 kb on + strand at 3233.765 kb on - strand, within Shewana3_2704 at 3233.798 kb on + strand, within Shewana3_2704 at 3234.072 kb on + strand, within Shewana3_2705 at 3234.190 kb on - strand, within Shewana3_2705 at 3234.274 kb on - strand, within Shewana3_2705 at 3234.426 kb on + strand at 3234.765 kb on + strand, within Shewana3_2706 at 3234.853 kb on - strand, within Shewana3_2706
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,232,235 + Shewana3_2703 0.69 +0.2 3,232,238 - Shewana3_2703 0.69 -1.1 3,232,375 + Shewana3_2703 0.74 -0.5 3,232,383 - Shewana3_2703 0.74 -0.6 3,232,383 - Shewana3_2703 0.74 -1.0 3,232,383 - Shewana3_2703 0.74 -0.6 3,232,383 - Shewana3_2703 0.74 +1.0 3,232,415 - Shewana3_2703 0.75 -0.4 3,232,608 + Shewana3_2703 0.82 +0.8 3,232,656 - Shewana3_2703 0.84 -0.1 3,232,814 - Shewana3_2703 0.89 +0.3 3,232,869 + -0.4 3,232,877 - +1.2 3,233,020 - +0.6 3,233,065 + +1.9 3,233,765 - Shewana3_2704 0.85 -1.7 3,233,798 + Shewana3_2704 0.90 +0.2 3,234,072 + Shewana3_2705 0.20 -0.1 3,234,190 - Shewana3_2705 0.47 +0.8 3,234,274 - Shewana3_2705 0.65 -0.2 3,234,426 + -0.1 3,234,765 + Shewana3_2706 0.43 -1.1 3,234,853 - Shewana3_2706 0.66 +0.6
Or see this region's nucleotide sequence