Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2641 and ffs are separated by 51 nucleotides ffs and Shewana3_2642 are separated by 217 nucleotides Shewana3_2642 and Shewana3_2643 are separated by 205 nucleotides Shewana3_2643 and Shewana3_2644 are separated by 318 nucleotides
Shewana3_2641: Shewana3_2641 - phage integrase family protein (RefSeq), at 3,154,100 to 3,155,380
_2641
Shewana3_R0111: ffs - SRP RNA; RNA component of signal recognition particle (NCBI), at 3,155,432 to 3,155,547
ffs
Shewana3_2642: Shewana3_2642 - helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq), at 3,155,765 to 3,156,130
_2642
Shewana3_2643: Shewana3_2643 - methionine gamma-lyase (RefSeq), at 3,156,336 to 3,157,529
_2643
Shewana3_2644: Shewana3_2644 - hypothetical protein (RefSeq), at 3,157,848 to 3,159,050
_2644
Position (kb)
3156
3157
3158 Strain fitness (log2 ratio)
-1
0
1
2 at 3155.808 kb on - strand, within Shewana3_2642 at 3155.893 kb on - strand, within Shewana3_2642 at 3155.922 kb on - strand, within Shewana3_2642 at 3156.382 kb on + strand at 3156.397 kb on - strand at 3156.533 kb on + strand, within Shewana3_2643 at 3156.666 kb on - strand, within Shewana3_2643 at 3156.718 kb on - strand, within Shewana3_2643 at 3156.887 kb on - strand, within Shewana3_2643 at 3156.917 kb on - strand, within Shewana3_2643 at 3157.185 kb on + strand, within Shewana3_2643 at 3157.322 kb on + strand, within Shewana3_2643 at 3157.341 kb on + strand, within Shewana3_2643 at 3157.349 kb on - strand, within Shewana3_2643 at 3157.392 kb on + strand, within Shewana3_2643 at 3157.521 kb on + strand at 3157.637 kb on + strand at 3157.881 kb on - strand at 3157.881 kb on - strand at 3157.957 kb on - strand at 3158.208 kb on - strand, within Shewana3_2644 at 3158.225 kb on + strand, within Shewana3_2644 at 3158.459 kb on - strand, within Shewana3_2644
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,155,808 - Shewana3_2642 0.12 -0.0 3,155,893 - Shewana3_2642 0.35 +0.6 3,155,922 - Shewana3_2642 0.43 +0.7 3,156,382 + +2.2 3,156,397 - +0.5 3,156,533 + Shewana3_2643 0.16 +2.2 3,156,666 - Shewana3_2643 0.28 +1.2 3,156,718 - Shewana3_2643 0.32 -1.0 3,156,887 - Shewana3_2643 0.46 +2.2 3,156,917 - Shewana3_2643 0.49 -0.1 3,157,185 + Shewana3_2643 0.71 -0.1 3,157,322 + Shewana3_2643 0.83 +1.2 3,157,341 + Shewana3_2643 0.84 -0.1 3,157,349 - Shewana3_2643 0.85 -0.8 3,157,392 + Shewana3_2643 0.88 +1.2 3,157,521 + -1.7 3,157,637 + +2.2 3,157,881 - -0.1 3,157,881 - +0.4 3,157,957 - -0.8 3,158,208 - Shewana3_2644 0.30 -0.4 3,158,225 + Shewana3_2644 0.31 +1.5 3,158,459 - Shewana3_2644 0.51 -1.0
Or see this region's nucleotide sequence