Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2612
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,118,334 | + | +0.2 | |||
3,118,368 | + | +0.5 | |||
3,118,725 | + | +1.4 | |||
3,118,738 | - | -0.4 | |||
3,118,861 | + | Shewana3_2612 | 0.20 | +1.2 | |
3,118,873 | - | Shewana3_2612 | 0.21 | -0.2 | |
3,118,886 | + | Shewana3_2612 | 0.22 | +0.6 | |
3,118,928 | - | Shewana3_2612 | 0.25 | -0.1 | |
3,118,966 | + | Shewana3_2612 | 0.29 | +2.2 | |
3,119,056 | - | Shewana3_2612 | 0.36 | +0.9 | |
3,119,309 | + | Shewana3_2612 | 0.57 | -2.4 | |
3,119,435 | - | Shewana3_2612 | 0.68 | +0.3 | |
3,119,557 | - | Shewana3_2612 | 0.78 | +0.8 | |
3,119,600 | + | Shewana3_2612 | 0.81 | -1.3 | |
3,119,719 | - | -0.6 | |||
3,119,884 | - | +0.2 | |||
3,120,023 | + | -0.8 | |||
3,120,054 | - | +0.8 | |||
3,120,081 | + | -1.4 | |||
3,120,220 | - | Shewana3_2613 | 0.14 | +1.6 | |
3,120,329 | - | Shewana3_2613 | 0.28 | +0.4 | |
3,120,407 | - | Shewana3_2613 | 0.37 | -0.1 | |
3,120,646 | - | Shewana3_2613 | 0.67 | +0.4 | |
3,120,678 | + | Shewana3_2613 | 0.71 | +0.6 | |
3,120,759 | + | Shewana3_2613 | 0.81 | +1.2 |
Or see this region's nucleotide sequence