Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2612

Experiment: Fusidic 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2611 and Shewana3_2612 overlap by 4 nucleotidesShewana3_2612 and Shewana3_2613 are separated by 280 nucleotides Shewana3_2611: Shewana3_2611 - exonuclease SbcC, putative (RefSeq), at 3,115,569 to 3,118,625 _2611 Shewana3_2612: Shewana3_2612 - exodeoxyribonuclease I subunit D (RefSeq), at 3,118,622 to 3,119,824 _2612 Shewana3_2613: Shewana3_2613 - hypothetical protein (RefSeq), at 3,120,105 to 3,120,914 _2613 Position (kb) 3118 3119 3120Strain fitness (log2 ratio) -2 -1 0 1 2at 3118.334 kb on + strandat 3118.368 kb on + strandat 3118.725 kb on + strandat 3118.738 kb on - strandat 3118.861 kb on + strand, within Shewana3_2612at 3118.873 kb on - strand, within Shewana3_2612at 3118.886 kb on + strand, within Shewana3_2612at 3118.928 kb on - strand, within Shewana3_2612at 3118.966 kb on + strand, within Shewana3_2612at 3119.056 kb on - strand, within Shewana3_2612at 3119.309 kb on + strand, within Shewana3_2612at 3119.435 kb on - strand, within Shewana3_2612at 3119.557 kb on - strand, within Shewana3_2612at 3119.600 kb on + strand, within Shewana3_2612at 3119.719 kb on - strandat 3119.884 kb on - strandat 3120.023 kb on + strandat 3120.054 kb on - strandat 3120.081 kb on + strandat 3120.220 kb on - strand, within Shewana3_2613at 3120.329 kb on - strand, within Shewana3_2613at 3120.407 kb on - strand, within Shewana3_2613at 3120.646 kb on - strand, within Shewana3_2613at 3120.678 kb on + strand, within Shewana3_2613at 3120.759 kb on + strand, within Shewana3_2613

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
remove
3,118,334 + +0.2
3,118,368 + +0.5
3,118,725 + +1.4
3,118,738 - -0.4
3,118,861 + Shewana3_2612 0.20 +1.2
3,118,873 - Shewana3_2612 0.21 -0.2
3,118,886 + Shewana3_2612 0.22 +0.6
3,118,928 - Shewana3_2612 0.25 -0.1
3,118,966 + Shewana3_2612 0.29 +2.2
3,119,056 - Shewana3_2612 0.36 +0.9
3,119,309 + Shewana3_2612 0.57 -2.4
3,119,435 - Shewana3_2612 0.68 +0.3
3,119,557 - Shewana3_2612 0.78 +0.8
3,119,600 + Shewana3_2612 0.81 -1.3
3,119,719 - -0.6
3,119,884 - +0.2
3,120,023 + -0.8
3,120,054 - +0.8
3,120,081 + -1.4
3,120,220 - Shewana3_2613 0.14 +1.6
3,120,329 - Shewana3_2613 0.28 +0.4
3,120,407 - Shewana3_2613 0.37 -0.1
3,120,646 - Shewana3_2613 0.67 +0.4
3,120,678 + Shewana3_2613 0.71 +0.6
3,120,759 + Shewana3_2613 0.81 +1.2

Or see this region's nucleotide sequence