Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2557

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2555 and Shewana3_2556 are separated by 116 nucleotidesShewana3_2556 and Shewana3_2557 are separated by 180 nucleotidesShewana3_2557 and Shewana3_2558 are separated by 603 nucleotides Shewana3_2555: Shewana3_2555 - thioesterase superfamily protein (RefSeq), at 3,057,397 to 3,057,876 _2555 Shewana3_2556: Shewana3_2556 - hypothetical protein (RefSeq), at 3,057,993 to 3,058,361 _2556 Shewana3_2557: Shewana3_2557 - 3-oxoacyl-[acyl-carrier-protein] synthase II (RefSeq), at 3,058,542 to 3,059,780 _2557 Shewana3_2558: Shewana3_2558 - 3-oxoacyl-[acyl-carrier-protein] reductase (RefSeq), at 3,060,384 to 3,061,130 _2558 Position (kb) 3058 3059 3060Strain fitness (log2 ratio) -1 0 1 2at 3057.617 kb on - strand, within Shewana3_2555at 3057.701 kb on - strand, within Shewana3_2555at 3058.599 kb on - strandat 3059.204 kb on - strand, within Shewana3_2557at 3059.603 kb on - strand, within Shewana3_2557

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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3,057,617 - Shewana3_2555 0.46 +2.2
3,057,701 - Shewana3_2555 0.63 +0.9
3,058,599 - -0.4
3,059,204 - Shewana3_2557 0.53 +1.4
3,059,603 - Shewana3_2557 0.86 -0.2

Or see this region's nucleotide sequence