Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2501 and Shewana3_2502 are separated by 55 nucleotides Shewana3_2502 and Shewana3_2503 are separated by 41 nucleotides
Shewana3_2501: Shewana3_2501 - cyclic nucleotide-binding protein (RefSeq), at 2,992,851 to 2,993,531
_2501
Shewana3_2502: Shewana3_2502 - hypothetical protein (RefSeq), at 2,993,587 to 2,994,771
_2502
Shewana3_2503: Shewana3_2503 - purine nucleoside phosphorylase (RefSeq), at 2,994,813 to 2,995,517
_2503
Position (kb)
2993
2994
2995 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2992.738 kb on - strand at 2992.879 kb on + strand at 2992.904 kb on - strand at 2992.980 kb on + strand, within Shewana3_2501 at 2993.014 kb on - strand, within Shewana3_2501 at 2993.160 kb on + strand, within Shewana3_2501 at 2993.380 kb on + strand, within Shewana3_2501 at 2993.380 kb on + strand, within Shewana3_2501 at 2993.445 kb on - strand, within Shewana3_2501 at 2993.452 kb on + strand, within Shewana3_2501 at 2993.524 kb on + strand at 2993.974 kb on + strand, within Shewana3_2502 at 2994.030 kb on - strand, within Shewana3_2502 at 2994.101 kb on + strand, within Shewana3_2502 at 2994.112 kb on - strand, within Shewana3_2502 at 2994.168 kb on - strand, within Shewana3_2502 at 2994.427 kb on - strand, within Shewana3_2502 at 2994.811 kb on + strand at 2995.103 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.109 kb on - strand, within Shewana3_2503 at 2995.164 kb on - strand, within Shewana3_2503 at 2995.164 kb on - strand, within Shewana3_2503 at 2995.318 kb on - strand, within Shewana3_2503 at 2995.318 kb on - strand, within Shewana3_2503 at 2995.504 kb on - strand at 2995.513 kb on + strand at 2995.521 kb on - strand at 2995.527 kb on - strand at 2995.632 kb on - strand at 2995.655 kb on - strand at 2995.683 kb on - strand at 2995.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,992,738 - +0.1 2,992,879 + -0.2 2,992,904 - -2.2 2,992,980 + Shewana3_2501 0.19 -0.7 2,993,014 - Shewana3_2501 0.24 -1.3 2,993,160 + Shewana3_2501 0.45 -1.6 2,993,380 + Shewana3_2501 0.78 -1.6 2,993,380 + Shewana3_2501 0.78 -0.8 2,993,445 - Shewana3_2501 0.87 +1.1 2,993,452 + Shewana3_2501 0.88 -0.5 2,993,524 + +1.0 2,993,974 + Shewana3_2502 0.33 -0.8 2,994,030 - Shewana3_2502 0.37 -1.4 2,994,101 + Shewana3_2502 0.43 +3.2 2,994,112 - Shewana3_2502 0.44 -1.9 2,994,168 - Shewana3_2502 0.49 -0.1 2,994,427 - Shewana3_2502 0.71 +0.2 2,994,811 + +2.2 2,995,103 - Shewana3_2503 0.41 +0.3 2,995,109 - Shewana3_2503 0.42 -0.4 2,995,109 - Shewana3_2503 0.42 -1.3 2,995,109 - Shewana3_2503 0.42 -0.3 2,995,109 - Shewana3_2503 0.42 -2.4 2,995,164 - Shewana3_2503 0.50 +1.2 2,995,164 - Shewana3_2503 0.50 -1.8 2,995,318 - Shewana3_2503 0.72 +0.6 2,995,318 - Shewana3_2503 0.72 +0.6 2,995,504 - +0.6 2,995,513 + -1.3 2,995,521 - +2.2 2,995,527 - -0.4 2,995,632 - -1.8 2,995,655 - -0.8 2,995,683 - +0.9 2,995,732 - +1.2
Or see this region's nucleotide sequence