Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2437

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2436 and Shewana3_2437 are separated by 164 nucleotidesShewana3_2437 and nadE are separated by 166 nucleotides Shewana3_2436: Shewana3_2436 - hypothetical protein (RefSeq), at 2,921,662 to 2,923,128 _2436 Shewana3_2437: Shewana3_2437 - hypothetical protein (RefSeq), at 2,923,293 to 2,923,814 _2437 Shewana3_2438: nadE - NAD synthetase (RefSeq), at 2,923,981 to 2,924,871 nadE Position (kb) 2923 2924Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2922.500 kb on - strand, within Shewana3_2436at 2922.600 kb on - strand, within Shewana3_2436at 2922.663 kb on + strand, within Shewana3_2436at 2922.671 kb on - strand, within Shewana3_2436at 2922.781 kb on - strand, within Shewana3_2436at 2923.376 kb on + strand, within Shewana3_2437at 2923.474 kb on - strand, within Shewana3_2437at 2923.547 kb on + strand, within Shewana3_2437at 2923.721 kb on - strand, within Shewana3_2437at 2923.723 kb on + strand, within Shewana3_2437at 2923.733 kb on - strand, within Shewana3_2437at 2923.808 kb on + strandat 2923.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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2,922,500 - Shewana3_2436 0.57 -2.8
2,922,600 - Shewana3_2436 0.64 -1.2
2,922,663 + Shewana3_2436 0.68 +2.3
2,922,671 - Shewana3_2436 0.69 -1.7
2,922,781 - Shewana3_2436 0.76 -1.7
2,923,376 + Shewana3_2437 0.16 +0.7
2,923,474 - Shewana3_2437 0.35 +1.3
2,923,547 + Shewana3_2437 0.49 +0.7
2,923,721 - Shewana3_2437 0.82 -0.3
2,923,723 + Shewana3_2437 0.82 +1.1
2,923,733 - Shewana3_2437 0.84 +1.9
2,923,808 + -2.2
2,923,881 - +1.3

Or see this region's nucleotide sequence