Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2426 and Shewana3_2427 are separated by 77 nucleotides Shewana3_2427 and Shewana3_2428 are separated by 66 nucleotides Shewana3_2428 and Shewana3_2429 are separated by 138 nucleotides
Shewana3_2426: Shewana3_2426 - nucleoid-associated protein NdpA (RefSeq), at 2,908,992 to 2,910,020
_2426
Shewana3_2427: Shewana3_2427 - hypothetical protein (RefSeq), at 2,910,098 to 2,910,316
_2427
Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173
_2428
Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424
_2429
Position (kb)
2910
2911
2912
2913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2909.384 kb on - strand, within Shewana3_2426 at 2909.424 kb on - strand, within Shewana3_2426 at 2909.821 kb on + strand, within Shewana3_2426 at 2909.884 kb on + strand, within Shewana3_2426 at 2909.907 kb on + strand, within Shewana3_2426 at 2910.054 kb on + strand at 2910.669 kb on + strand at 2911.075 kb on - strand, within Shewana3_2428 at 2911.104 kb on - strand at 2911.223 kb on + strand, within Shewana3_2428 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.503 kb on + strand, within Shewana3_2428 at 2911.511 kb on - strand, within Shewana3_2428 at 2911.731 kb on + strand, within Shewana3_2428 at 2911.949 kb on - strand, within Shewana3_2428 at 2912.063 kb on + strand at 2912.221 kb on + strand at 2912.409 kb on - strand at 2912.409 kb on - strand at 2912.519 kb on - strand, within Shewana3_2429 at 2912.698 kb on + strand, within Shewana3_2429 at 2912.700 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.766 kb on - strand, within Shewana3_2429 at 2912.942 kb on - strand, within Shewana3_2429 at 2913.018 kb on - strand, within Shewana3_2429
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,909,384 - Shewana3_2426 0.38 +1.8 2,909,424 - Shewana3_2426 0.42 +0.9 2,909,821 + Shewana3_2426 0.81 -0.6 2,909,884 + Shewana3_2426 0.87 +0.1 2,909,907 + Shewana3_2426 0.89 -0.8 2,910,054 + -3.0 2,910,669 + +2.3 2,911,075 - Shewana3_2428 0.39 -1.1 2,911,104 - +1.3 2,911,223 + Shewana3_2428 0.47 -0.9 2,911,362 + Shewana3_2428 0.55 +2.3 2,911,362 + Shewana3_2428 0.55 +1.3 2,911,503 + Shewana3_2428 0.63 -1.4 2,911,511 - Shewana3_2428 0.63 -0.7 2,911,731 + Shewana3_2428 0.75 -1.3 2,911,949 - Shewana3_2428 0.87 -0.1 2,912,063 + +0.4 2,912,221 + -0.9 2,912,409 - +1.7 2,912,409 - -1.4 2,912,519 - Shewana3_2429 0.19 -1.6 2,912,698 + Shewana3_2429 0.35 +2.3 2,912,700 - Shewana3_2429 0.35 +0.4 2,912,706 - Shewana3_2429 0.35 +0.2 2,912,706 - Shewana3_2429 0.35 -0.7 2,912,766 - Shewana3_2429 0.41 +0.3 2,912,942 - Shewana3_2429 0.57 -0.6 2,913,018 - Shewana3_2429 0.63 -0.2
Or see this region's nucleotide sequence