Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2354 and Shewana3_2355 are separated by 12 nucleotides Shewana3_2355 and Shewana3_2356 overlap by 4 nucleotides
Shewana3_2354: Shewana3_2354 - phage integrase family protein (RefSeq), at 2,831,908 to 2,835,000
_2354
Shewana3_2355: Shewana3_2355 - metal dependent phosphohydrolase (RefSeq), at 2,835,013 to 2,835,888
_2355
Shewana3_2356: Shewana3_2356 - phage integrase family protein (RefSeq), at 2,835,885 to 2,837,063
_2356
Position (kb)
2835
2836 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2834.026 kb on + strand, within Shewana3_2354 at 2834.034 kb on - strand at 2834.314 kb on + strand, within Shewana3_2354 at 2834.322 kb on - strand, within Shewana3_2354 at 2834.400 kb on + strand, within Shewana3_2354 at 2834.400 kb on - strand, within Shewana3_2354 at 2834.501 kb on - strand, within Shewana3_2354 at 2834.621 kb on - strand, within Shewana3_2354 at 2834.644 kb on - strand, within Shewana3_2354 at 2834.692 kb on + strand at 2834.727 kb on + strand at 2835.167 kb on - strand, within Shewana3_2355 at 2835.240 kb on - strand, within Shewana3_2355 at 2835.713 kb on - strand, within Shewana3_2355 at 2835.786 kb on + strand, within Shewana3_2355 at 2835.786 kb on + strand, within Shewana3_2355 at 2835.789 kb on - strand, within Shewana3_2355 at 2835.794 kb on - strand, within Shewana3_2355 at 2835.950 kb on - strand at 2836.040 kb on + strand, within Shewana3_2356 at 2836.126 kb on - strand, within Shewana3_2356 at 2836.270 kb on + strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.367 kb on - strand, within Shewana3_2356 at 2836.391 kb on - strand, within Shewana3_2356 at 2836.416 kb on - strand, within Shewana3_2356 at 2836.438 kb on - strand, within Shewana3_2356 at 2836.689 kb on - strand, within Shewana3_2356
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,834,026 + Shewana3_2354 0.68 +3.4 2,834,034 - +0.8 2,834,314 + Shewana3_2354 0.78 -0.2 2,834,322 - Shewana3_2354 0.78 -1.5 2,834,400 + Shewana3_2354 0.81 +1.6 2,834,400 - Shewana3_2354 0.81 -0.9 2,834,501 - Shewana3_2354 0.84 +0.2 2,834,621 - Shewana3_2354 0.88 +0.4 2,834,644 - Shewana3_2354 0.88 -1.0 2,834,692 + +2.4 2,834,727 + +1.4 2,835,167 - Shewana3_2355 0.18 -1.7 2,835,240 - Shewana3_2355 0.26 +0.1 2,835,713 - Shewana3_2355 0.80 -1.3 2,835,786 + Shewana3_2355 0.88 -0.2 2,835,786 + Shewana3_2355 0.88 +0.8 2,835,789 - Shewana3_2355 0.89 +0.4 2,835,794 - Shewana3_2355 0.89 -1.1 2,835,950 - -0.4 2,836,040 + Shewana3_2356 0.13 +2.4 2,836,126 - Shewana3_2356 0.20 +0.4 2,836,270 + Shewana3_2356 0.33 +0.1 2,836,297 - Shewana3_2356 0.35 -1.9 2,836,297 - Shewana3_2356 0.35 -0.3 2,836,367 - Shewana3_2356 0.41 -1.5 2,836,391 - Shewana3_2356 0.43 -0.4 2,836,416 - Shewana3_2356 0.45 +0.4 2,836,438 - Shewana3_2356 0.47 -0.2 2,836,689 - Shewana3_2356 0.68 +2.0
Or see this region's nucleotide sequence