Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2355

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2354 and Shewana3_2355 are separated by 12 nucleotidesShewana3_2355 and Shewana3_2356 overlap by 4 nucleotides Shewana3_2354: Shewana3_2354 - phage integrase family protein (RefSeq), at 2,831,908 to 2,835,000 _2354 Shewana3_2355: Shewana3_2355 - metal dependent phosphohydrolase (RefSeq), at 2,835,013 to 2,835,888 _2355 Shewana3_2356: Shewana3_2356 - phage integrase family protein (RefSeq), at 2,835,885 to 2,837,063 _2356 Position (kb) 2835 2836Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2834.026 kb on + strand, within Shewana3_2354at 2834.034 kb on - strandat 2834.314 kb on + strand, within Shewana3_2354at 2834.322 kb on - strand, within Shewana3_2354at 2834.400 kb on + strand, within Shewana3_2354at 2834.400 kb on - strand, within Shewana3_2354at 2834.501 kb on - strand, within Shewana3_2354at 2834.621 kb on - strand, within Shewana3_2354at 2834.644 kb on - strand, within Shewana3_2354at 2834.692 kb on + strandat 2834.727 kb on + strandat 2835.167 kb on - strand, within Shewana3_2355at 2835.240 kb on - strand, within Shewana3_2355at 2835.713 kb on - strand, within Shewana3_2355at 2835.786 kb on + strand, within Shewana3_2355at 2835.786 kb on + strand, within Shewana3_2355at 2835.789 kb on - strand, within Shewana3_2355at 2835.794 kb on - strand, within Shewana3_2355at 2835.950 kb on - strandat 2836.040 kb on + strand, within Shewana3_2356at 2836.126 kb on - strand, within Shewana3_2356at 2836.270 kb on + strand, within Shewana3_2356at 2836.297 kb on - strand, within Shewana3_2356at 2836.297 kb on - strand, within Shewana3_2356at 2836.367 kb on - strand, within Shewana3_2356at 2836.391 kb on - strand, within Shewana3_2356at 2836.416 kb on - strand, within Shewana3_2356at 2836.438 kb on - strand, within Shewana3_2356at 2836.689 kb on - strand, within Shewana3_2356

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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2,834,026 + Shewana3_2354 0.68 +3.4
2,834,034 - +0.8
2,834,314 + Shewana3_2354 0.78 -0.2
2,834,322 - Shewana3_2354 0.78 -1.5
2,834,400 + Shewana3_2354 0.81 +1.6
2,834,400 - Shewana3_2354 0.81 -0.9
2,834,501 - Shewana3_2354 0.84 +0.2
2,834,621 - Shewana3_2354 0.88 +0.4
2,834,644 - Shewana3_2354 0.88 -1.0
2,834,692 + +2.4
2,834,727 + +1.4
2,835,167 - Shewana3_2355 0.18 -1.7
2,835,240 - Shewana3_2355 0.26 +0.1
2,835,713 - Shewana3_2355 0.80 -1.3
2,835,786 + Shewana3_2355 0.88 -0.2
2,835,786 + Shewana3_2355 0.88 +0.8
2,835,789 - Shewana3_2355 0.89 +0.4
2,835,794 - Shewana3_2355 0.89 -1.1
2,835,950 - -0.4
2,836,040 + Shewana3_2356 0.13 +2.4
2,836,126 - Shewana3_2356 0.20 +0.4
2,836,270 + Shewana3_2356 0.33 +0.1
2,836,297 - Shewana3_2356 0.35 -1.9
2,836,297 - Shewana3_2356 0.35 -0.3
2,836,367 - Shewana3_2356 0.41 -1.5
2,836,391 - Shewana3_2356 0.43 -0.4
2,836,416 - Shewana3_2356 0.45 +0.4
2,836,438 - Shewana3_2356 0.47 -0.2
2,836,689 - Shewana3_2356 0.68 +2.0

Or see this region's nucleotide sequence