Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2259

Experiment: Fusidic 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2257 and Shewana3_2258 are separated by 72 nucleotidesShewana3_2258 and Shewana3_2259 are separated by 142 nucleotidesShewana3_2259 and Shewana3_2260 are separated by 87 nucleotides Shewana3_2257: Shewana3_2257 - phosphoenolpyruvate--protein phosphotransferase (RefSeq), at 2,718,641 to 2,720,344 _2257 Shewana3_2258: Shewana3_2258 - glucose-specific PTS system component (RefSeq), at 2,720,417 to 2,720,926 _2258 Shewana3_2259: Shewana3_2259 - hypothetical protein (RefSeq), at 2,721,069 to 2,721,431 _2259 Shewana3_2260: Shewana3_2260 - hypothetical protein (RefSeq), at 2,721,519 to 2,722,034 _2260 Position (kb) 2721 2722Strain fitness (log2 ratio) -1 0 1 2at 2720.107 kb on + strand, within Shewana3_2257at 2720.307 kb on - strandat 2720.323 kb on + strandat 2720.323 kb on + strandat 2720.365 kb on + strandat 2720.769 kb on + strand, within Shewana3_2258at 2721.000 kb on - strandat 2721.017 kb on - strandat 2721.147 kb on - strand, within Shewana3_2259at 2721.476 kb on + strandat 2721.766 kb on - strand, within Shewana3_2260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
remove
2,720,107 + Shewana3_2257 0.86 +2.4
2,720,307 - +0.8
2,720,323 + +0.1
2,720,323 + -0.6
2,720,365 + +0.1
2,720,769 + Shewana3_2258 0.69 +2.4
2,721,000 - +1.4
2,721,017 - -0.1
2,721,147 - Shewana3_2259 0.21 -0.8
2,721,476 + +2.4
2,721,766 - Shewana3_2260 0.48 +2.4

Or see this region's nucleotide sequence