Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2075 and Shewana3_2076 overlap by 4 nucleotides Shewana3_2076 and Shewana3_2077 overlap by 26 nucleotides Shewana3_2077 and Shewana3_2078 are separated by 66 nucleotides
Shewana3_2075: Shewana3_2075 - L-arabinose ABC transporter, permease component 1 AraW (from data) , at 2,483,751 to 2,484,968
_2075
Shewana3_2076: Shewana3_2076 - L-arabinose ABC transporter, permease component 2 AraZ (from data) , at 2,484,965 to 2,485,927
_2076
Shewana3_2077: Shewana3_2077 - glycoside hydrolase family protein (RefSeq), at 2,485,902 to 2,487,035
_2077
Shewana3_2078: Shewana3_2078 - glycoside hydrolase family protein (RefSeq), at 2,487,102 to 2,488,103
_2078
Position (kb)
2485
2486
2487
2488 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2485.035 kb on + strand at 2485.322 kb on - strand, within Shewana3_2076 at 2485.354 kb on - strand, within Shewana3_2076 at 2485.361 kb on - strand, within Shewana3_2076 at 2485.433 kb on - strand, within Shewana3_2076 at 2485.494 kb on + strand, within Shewana3_2076 at 2485.826 kb on + strand, within Shewana3_2076 at 2485.950 kb on - strand at 2485.962 kb on + strand at 2485.968 kb on + strand at 2486.066 kb on - strand, within Shewana3_2077 at 2486.066 kb on - strand, within Shewana3_2077 at 2486.227 kb on - strand, within Shewana3_2077 at 2486.458 kb on + strand, within Shewana3_2077 at 2486.465 kb on + strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.506 kb on - strand, within Shewana3_2077 at 2486.717 kb on + strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.801 kb on - strand, within Shewana3_2077 at 2486.867 kb on + strand, within Shewana3_2077 at 2486.877 kb on - strand, within Shewana3_2077 at 2486.930 kb on - strand at 2486.998 kb on + strand at 2487.221 kb on + strand, within Shewana3_2078 at 2487.244 kb on + strand, within Shewana3_2078 at 2487.252 kb on - strand, within Shewana3_2078 at 2487.544 kb on - strand, within Shewana3_2078 at 2487.612 kb on + strand, within Shewana3_2078 at 2487.985 kb on - strand, within Shewana3_2078
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,485,035 + +0.8 2,485,322 - Shewana3_2076 0.37 +1.4 2,485,354 - Shewana3_2076 0.40 -0.2 2,485,361 - Shewana3_2076 0.41 -0.9 2,485,433 - Shewana3_2076 0.49 -0.8 2,485,494 + Shewana3_2076 0.55 +0.3 2,485,826 + Shewana3_2076 0.89 -0.2 2,485,950 - +1.4 2,485,962 + +2.4 2,485,968 + -0.6 2,486,066 - Shewana3_2077 0.14 +0.8 2,486,066 - Shewana3_2077 0.14 +0.8 2,486,227 - Shewana3_2077 0.29 +0.2 2,486,458 + Shewana3_2077 0.49 -1.8 2,486,465 + Shewana3_2077 0.50 +1.8 2,486,466 - Shewana3_2077 0.50 -1.5 2,486,466 - Shewana3_2077 0.50 +0.5 2,486,506 - Shewana3_2077 0.53 -0.7 2,486,717 + Shewana3_2077 0.72 -1.5 2,486,725 - Shewana3_2077 0.73 -0.8 2,486,725 - Shewana3_2077 0.73 +2.4 2,486,801 - Shewana3_2077 0.79 +0.4 2,486,867 + Shewana3_2077 0.85 -1.4 2,486,877 - Shewana3_2077 0.86 +3.6 2,486,930 - -1.3 2,486,998 + +0.1 2,487,221 + Shewana3_2078 0.12 -0.8 2,487,244 + Shewana3_2078 0.14 +0.7 2,487,252 - Shewana3_2078 0.15 +0.4 2,487,544 - Shewana3_2078 0.44 +1.4 2,487,612 + Shewana3_2078 0.51 +0.8 2,487,985 - Shewana3_2078 0.88 +0.8
Or see this region's nucleotide sequence