Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2048
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,455,093 | - | Shewana3_2047 | 0.53 | +4.4 | |
2,455,175 | + | +2.4 | |||
2,455,175 | + | Shewana3_2047 | 0.61 | +2.4 | |
2,455,183 | - | Shewana3_2047 | 0.62 | +3.9 | |
2,455,183 | - | Shewana3_2047 | 0.62 | +3.9 | |
2,455,219 | + | Shewana3_2047 | 0.66 | +3.5 | |
2,455,457 | - | +4.1 | |||
2,455,492 | - | +4.3 | |||
2,455,584 | + | +3.9 | |||
2,455,673 | - | +1.4 | |||
2,456,135 | - | Shewana3_2048 | 0.31 | +1.7 | |
2,456,364 | + | Shewana3_2048 | 0.51 | +1.4 | |
2,456,672 | - | Shewana3_2048 | 0.79 | +0.5 | |
2,456,692 | - | Shewana3_2048 | 0.80 | -0.3 | |
2,456,993 | + | +0.1 | |||
2,457,004 | - | -0.1 | |||
2,457,004 | - | -0.4 | |||
2,457,191 | + | Shewana3_2049 | 0.20 | +0.0 | |
2,457,191 | + | Shewana3_2049 | 0.20 | +1.9 | |
2,457,199 | - | Shewana3_2049 | 0.21 | -0.2 | |
2,457,219 | - | Shewana3_2049 | 0.25 | -1.3 | |
2,457,365 | + | Shewana3_2049 | 0.54 | +0.4 | |
2,457,378 | + | Shewana3_2049 | 0.57 | +1.4 |
Or see this region's nucleotide sequence