Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0086

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2038 and Shewana3_R0086 are separated by 489 nucleotidesShewana3_R0086 and Shewana3_R0087 are separated by 38 nucleotidesShewana3_R0087 and Shewana3_2039 are separated by 251 nucleotides Shewana3_2038: Shewana3_2038 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,440,874 to 2,447,236 _2038 Shewana3_R0086: Shewana3_R0086 - tRNA-Val (RefSeq), at 2,447,726 to 2,447,802 _R0086 Shewana3_R0087: Shewana3_R0087 - tRNA-Val (RefSeq), at 2,447,841 to 2,447,917 _R0087 Shewana3_2039: Shewana3_2039 - MATE efflux family protein (RefSeq), at 2,448,169 to 2,449,548 _2039 Position (kb) 2447 2448Strain fitness (log2 ratio) -3 -2 -1 0 1at 2447.037 kb on + strandat 2447.092 kb on + strandat 2447.263 kb on - strandat 2447.592 kb on - strandat 2447.942 kb on - strandat 2448.282 kb on - strandat 2448.744 kb on - strand, within Shewana3_2039

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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2,447,037 + +0.4
2,447,092 + +1.4
2,447,263 - +1.4
2,447,592 - +1.4
2,447,942 - +0.4
2,448,282 - +0.5
2,448,744 - Shewana3_2039 0.42 -2.8

Or see this region's nucleotide sequence