Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1907 and Shewana3_1908 are separated by 19 nucleotides Shewana3_1908 and Shewana3_1909 are separated by 438 nucleotides
Shewana3_1907: Shewana3_1907 - iron-containing alcohol dehydrogenase (RefSeq), at 2,263,547 to 2,264,617
_1907
Shewana3_1908: Shewana3_1908 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,264,637 to 2,265,824
_1908
Shewana3_1909: Shewana3_1909 - carbonic anhydrase (RefSeq), at 2,266,263 to 2,266,868
_1909
Position (kb)
2264
2265
2266 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2264.044 kb on - strand, within Shewana3_1907 at 2264.054 kb on - strand, within Shewana3_1907 at 2264.105 kb on + strand, within Shewana3_1907 at 2264.161 kb on - strand, within Shewana3_1907 at 2264.166 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.432 kb on - strand, within Shewana3_1907 at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.820 kb on - strand, within Shewana3_1908 at 2264.923 kb on - strand, within Shewana3_1908 at 2265.095 kb on - strand, within Shewana3_1908 at 2265.299 kb on - strand, within Shewana3_1908 at 2265.587 kb on - strand, within Shewana3_1908 at 2265.973 kb on + strand at 2265.995 kb on + strand at 2266.025 kb on - strand at 2266.057 kb on + strand at 2266.060 kb on - strand at 2266.083 kb on - strand at 2266.090 kb on + strand at 2266.586 kb on + strand, within Shewana3_1909 at 2266.641 kb on + strand, within Shewana3_1909
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,264,044 - Shewana3_1907 0.46 -0.1 2,264,054 - Shewana3_1907 0.47 -3.1 2,264,105 + Shewana3_1907 0.52 +2.4 2,264,161 - Shewana3_1907 0.57 +0.7 2,264,166 - Shewana3_1907 0.58 -1.4 2,264,408 - Shewana3_1907 0.80 -0.6 2,264,408 - Shewana3_1907 0.80 -1.4 2,264,408 - Shewana3_1907 0.80 +2.4 2,264,432 - Shewana3_1907 0.83 -1.8 2,264,531 - -1.3 2,264,531 - +0.4 2,264,531 - +1.4 2,264,531 - -1.5 2,264,531 - -1.0 2,264,820 - Shewana3_1908 0.15 -1.2 2,264,923 - Shewana3_1908 0.24 -1.7 2,265,095 - Shewana3_1908 0.39 -2.0 2,265,299 - Shewana3_1908 0.56 -1.8 2,265,587 - Shewana3_1908 0.80 -0.3 2,265,973 + -2.3 2,265,995 + -0.7 2,266,025 - +0.8 2,266,057 + -1.2 2,266,060 - -0.2 2,266,083 - +0.8 2,266,090 + +1.3 2,266,586 + Shewana3_1909 0.53 +2.4 2,266,641 + Shewana3_1909 0.62 +0.8
Or see this region's nucleotide sequence