Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1838 and Shewana3_1839 are separated by 345 nucleotides Shewana3_1839 and Shewana3_1840 are separated by 112 nucleotides Shewana3_1840 and Shewana3_1842 are separated by 198 nucleotides
Shewana3_1838: Shewana3_1838 - putative esterase (RefSeq), at 2,179,947 to 2,180,786
_1838
Shewana3_1839: Shewana3_1839 - peptidase S1 and S6, chymotrypsin/Hap (RefSeq), at 2,181,132 to 2,181,974
_1839
Shewana3_1840: Shewana3_1840 - no description, at 2,182,087 to 2,182,728
_1840
Shewana3_1842: Shewana3_1842 - hypothetical protein (RefSeq), at 2,182,927 to 2,183,268
_1842
Position (kb)
2181
2182 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2180.421 kb on + strand, within Shewana3_1838 at 2180.713 kb on - strand at 2180.756 kb on + strand at 2180.791 kb on + strand at 2180.823 kb on + strand at 2181.045 kb on + strand at 2181.053 kb on - strand at 2181.076 kb on - strand at 2181.415 kb on + strand, within Shewana3_1839 at 2181.472 kb on - strand, within Shewana3_1839 at 2181.757 kb on + strand, within Shewana3_1839 at 2181.767 kb on + strand, within Shewana3_1839 at 2182.031 kb on + strand at 2182.275 kb on + strand, within Shewana3_1840 at 2182.564 kb on + strand, within Shewana3_1840 at 2182.572 kb on - strand, within Shewana3_1840 at 2182.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,180,421 + Shewana3_1838 0.56 +0.9 2,180,713 - +2.4 2,180,756 + -0.4 2,180,791 + +0.8 2,180,823 + -1.1 2,181,045 + +2.4 2,181,053 - +2.0 2,181,076 - +0.7 2,181,415 + Shewana3_1839 0.34 +1.7 2,181,472 - Shewana3_1839 0.40 +0.1 2,181,757 + Shewana3_1839 0.74 -1.9 2,181,767 + Shewana3_1839 0.75 -1.8 2,182,031 + +0.4 2,182,275 + Shewana3_1840 0.29 -1.4 2,182,564 + Shewana3_1840 0.74 +1.0 2,182,572 - Shewana3_1840 0.76 -0.4 2,182,767 - +0.4
Or see this region's nucleotide sequence