Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1782 and Shewana3_1783 are separated by 55 nucleotides Shewana3_1783 and Shewana3_1784 are separated by 31 nucleotides
Shewana3_1782: Shewana3_1782 - hypothetical protein (RefSeq), at 2,100,290 to 2,101,654
_1782
Shewana3_1783: Shewana3_1783 - BNR repeat-containing protein (RefSeq), at 2,101,710 to 2,102,720
_1783
Shewana3_1784: Shewana3_1784 - hypothetical protein (RefSeq), at 2,102,752 to 2,105,067
_1784
Position (kb)
2101
2102
2103 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.729 kb on - strand, within Shewana3_1782 at 2100.958 kb on + strand, within Shewana3_1782 at 2100.958 kb on + strand, within Shewana3_1782 at 2100.966 kb on - strand, within Shewana3_1782 at 2101.013 kb on - strand, within Shewana3_1782 at 2101.073 kb on + strand, within Shewana3_1782 at 2101.475 kb on + strand, within Shewana3_1782 at 2101.512 kb on + strand, within Shewana3_1782 at 2101.512 kb on + strand, within Shewana3_1782 at 2101.520 kb on - strand at 2101.559 kb on + strand at 2101.672 kb on - strand at 2101.672 kb on - strand at 2101.702 kb on - strand at 2101.787 kb on + strand at 2102.092 kb on - strand, within Shewana3_1783 at 2102.140 kb on - strand, within Shewana3_1783 at 2102.375 kb on - strand, within Shewana3_1783 at 2102.398 kb on + strand, within Shewana3_1783 at 2102.542 kb on + strand, within Shewana3_1783 at 2102.700 kb on - strand at 2102.700 kb on - strand at 2102.700 kb on - strand at 2102.922 kb on - strand at 2103.076 kb on - strand, within Shewana3_1784 at 2103.151 kb on - strand, within Shewana3_1784 at 2103.178 kb on + strand, within Shewana3_1784 at 2103.178 kb on + strand, within Shewana3_1784 at 2103.362 kb on - strand, within Shewana3_1784 at 2103.505 kb on - strand, within Shewana3_1784
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,100,721 + Shewana3_1782 0.32 -0.6 2,100,721 + Shewana3_1782 0.32 -1.6 2,100,721 + Shewana3_1782 0.32 -1.1 2,100,721 + Shewana3_1782 0.32 -1.3 2,100,721 + Shewana3_1782 0.32 -0.6 2,100,721 + Shewana3_1782 0.32 -0.5 2,100,729 - Shewana3_1782 0.32 -0.0 2,100,958 + Shewana3_1782 0.49 +1.5 2,100,958 + Shewana3_1782 0.49 +1.3 2,100,966 - Shewana3_1782 0.50 +0.8 2,101,013 - Shewana3_1782 0.53 +1.1 2,101,073 + Shewana3_1782 0.57 +0.7 2,101,475 + Shewana3_1782 0.87 +0.6 2,101,512 + Shewana3_1782 0.90 +0.2 2,101,512 + Shewana3_1782 0.90 +0.5 2,101,520 - +0.8 2,101,559 + -1.6 2,101,672 - +1.4 2,101,672 - +1.4 2,101,702 - -2.1 2,101,787 + -0.6 2,102,092 - Shewana3_1783 0.38 +0.4 2,102,140 - Shewana3_1783 0.43 -0.1 2,102,375 - Shewana3_1783 0.66 +1.4 2,102,398 + Shewana3_1783 0.68 +1.4 2,102,542 + Shewana3_1783 0.82 +0.9 2,102,700 - +1.4 2,102,700 - +2.4 2,102,700 - -1.0 2,102,922 - +1.4 2,103,076 - Shewana3_1784 0.14 +1.4 2,103,151 - Shewana3_1784 0.17 +2.4 2,103,178 + Shewana3_1784 0.18 +0.8 2,103,178 + Shewana3_1784 0.18 -0.8 2,103,362 - Shewana3_1784 0.26 -1.1 2,103,505 - Shewana3_1784 0.33 +0.4
Or see this region's nucleotide sequence