Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1781
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,097,263 | + | +0.4 | |||
2,097,263 | + | +0.4 | |||
2,097,432 | + | +2.4 | |||
2,097,450 | + | +1.4 | |||
2,097,458 | - | -0.6 | |||
2,097,569 | - | +2.4 | |||
2,098,273 | + | -0.9 | |||
2,098,377 | - | +2.4 | |||
2,098,431 | + | +0.4 | |||
2,099,144 | + | Shewana3_1781 | 0.44 | +0.8 | |
2,099,247 | - | Shewana3_1781 | 0.50 | +1.4 | |
2,099,322 | - | Shewana3_1781 | 0.53 | +0.4 | |
2,099,753 | - | Shewana3_1781 | 0.74 | +1.9 | |
2,099,781 | + | Shewana3_1781 | 0.76 | +0.4 | |
2,100,098 | - | -0.6 | |||
2,100,127 | + | +2.1 | |||
2,100,210 | + | +1.0 | |||
2,100,333 | + | +0.4 | |||
2,100,436 | + | Shewana3_1782 | 0.11 | -0.2 | |
2,100,696 | - | Shewana3_1782 | 0.30 | +0.8 | |
2,100,721 | + | Shewana3_1782 | 0.32 | -0.6 | |
2,100,721 | + | Shewana3_1782 | 0.32 | -1.6 | |
2,100,721 | + | Shewana3_1782 | 0.32 | -1.1 | |
2,100,721 | + | Shewana3_1782 | 0.32 | -1.3 | |
2,100,721 | + | Shewana3_1782 | 0.32 | -0.6 | |
2,100,721 | + | Shewana3_1782 | 0.32 | -0.5 | |
2,100,729 | - | Shewana3_1782 | 0.32 | -0.0 | |
2,100,958 | + | Shewana3_1782 | 0.49 | +1.5 | |
2,100,958 | + | Shewana3_1782 | 0.49 | +1.3 | |
2,100,966 | - | Shewana3_1782 | 0.50 | +0.8 | |
2,101,013 | - | Shewana3_1782 | 0.53 | +1.1 | |
2,101,073 | + | Shewana3_1782 | 0.57 | +0.7 |
Or see this region's nucleotide sequence