Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1778
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,091,567 | + | -1.1 | |||
2,091,586 | - | +2.4 | |||
2,091,629 | - | +1.4 | |||
2,091,725 | + | -2.3 | |||
2,091,954 | + | Shewana3_1777 | 0.23 | -1.3 | |
2,092,047 | + | Shewana3_1777 | 0.37 | -1.2 | |
2,092,076 | + | Shewana3_1777 | 0.42 | -0.4 | |
2,092,402 | + | +0.0 | |||
2,092,851 | + | Shewana3_1778 | 0.18 | -1.7 | |
2,092,889 | + | Shewana3_1778 | 0.20 | -2.7 | |
2,093,561 | + | Shewana3_1778 | 0.53 | -1.7 | |
2,093,679 | + | Shewana3_1778 | 0.58 | -2.1 | |
2,093,840 | + | Shewana3_1778 | 0.66 | -1.9 | |
2,094,047 | + | Shewana3_1778 | 0.76 | -1.5 | |
2,094,047 | + | Shewana3_1778 | 0.76 | +0.0 | |
2,094,047 | + | Shewana3_1778 | 0.76 | +0.1 | |
2,094,181 | + | Shewana3_1778 | 0.83 | -2.9 | |
2,094,777 | - | +0.4 | |||
2,095,225 | - | pepN | Shewana3_1779 | 0.24 | +0.8 |
2,095,274 | + | pepN | Shewana3_1779 | 0.26 | -0.3 |
2,095,427 | - | pepN | Shewana3_1779 | 0.32 | -0.6 |
Or see this region's nucleotide sequence