Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1732 and Shewana3_1733 are separated by 221 nucleotides Shewana3_1733 and Shewana3_1734 are separated by 150 nucleotides Shewana3_1734 and Shewana3_1735 are separated by 181 nucleotides
Shewana3_1732: Shewana3_1732 - two component LuxR family transcriptional regulator (RefSeq), at 2,040,660 to 2,041,322
_1732
Shewana3_1733: Shewana3_1733 - thioesterase superfamily protein (RefSeq), at 2,041,544 to 2,041,975
_1733
Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190
_1734
Shewana3_1735: Shewana3_1735 - hypothetical protein (RefSeq), at 2,043,372 to 2,044,184
_1735
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2041.179 kb on + strand, within Shewana3_1732 at 2041.511 kb on - strand at 2041.680 kb on + strand, within Shewana3_1733 at 2041.829 kb on + strand, within Shewana3_1733 at 2041.847 kb on + strand, within Shewana3_1733 at 2041.932 kb on - strand at 2041.990 kb on - strand at 2042.168 kb on - strand at 2042.421 kb on - strand, within Shewana3_1734 at 2042.651 kb on + strand, within Shewana3_1734 at 2042.691 kb on - strand, within Shewana3_1734 at 2042.710 kb on + strand, within Shewana3_1734 at 2042.951 kb on + strand, within Shewana3_1734 at 2042.978 kb on + strand, within Shewana3_1734 at 2043.032 kb on + strand, within Shewana3_1734 at 2043.120 kb on + strand at 2043.143 kb on - strand at 2043.254 kb on + strand at 2043.256 kb on + strand at 2043.256 kb on + strand at 2043.264 kb on - strand at 2043.264 kb on - strand at 2043.363 kb on - strand at 2043.438 kb on - strand at 2043.512 kb on + strand, within Shewana3_1735 at 2043.512 kb on + strand, within Shewana3_1735
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,041,179 + Shewana3_1732 0.78 +0.3 2,041,511 - -1.1 2,041,680 + Shewana3_1733 0.31 -0.3 2,041,829 + Shewana3_1733 0.66 -0.7 2,041,847 + Shewana3_1733 0.70 +1.3 2,041,932 - -0.4 2,041,990 - +2.3 2,042,168 - +1.4 2,042,421 - Shewana3_1734 0.28 +2.5 2,042,651 + Shewana3_1734 0.49 +2.3 2,042,691 - Shewana3_1734 0.53 +0.4 2,042,710 + Shewana3_1734 0.55 +0.7 2,042,951 + Shewana3_1734 0.77 -0.3 2,042,978 + Shewana3_1734 0.80 +0.7 2,043,032 + Shewana3_1734 0.85 +1.3 2,043,120 + +1.7 2,043,143 - +0.2 2,043,254 + -0.7 2,043,256 + -1.4 2,043,256 + +1.7 2,043,264 - +0.3 2,043,264 - +0.4 2,043,363 - +2.1 2,043,438 - +2.3 2,043,512 + Shewana3_1735 0.17 -1.9 2,043,512 + Shewana3_1735 0.17 +2.3
Or see this region's nucleotide sequence