Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1720 and Shewana3_1721 are separated by 80 nucleotides Shewana3_1721 and Shewana3_1722 are separated by 116 nucleotides Shewana3_1722 and Shewana3_1723 are separated by 15 nucleotides
Shewana3_1720: Shewana3_1720 - magnesium and cobalt transport protein CorA (RefSeq), at 2,022,967 to 2,023,914
_1720
Shewana3_1721: Shewana3_1721 - metal dependent phosphohydrolase (RefSeq), at 2,023,995 to 2,025,257
_1721
Shewana3_1722: Shewana3_1722 - prolyl 4-hydroxylase, alpha subunit (RefSeq), at 2,025,374 to 2,026,069
_1722
Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434
_1723
Position (kb)
2023
2024
2025
2026 Strain fitness (log2 ratio)
-1
0
1 at 2023.143 kb on + strand, within Shewana3_1720 at 2023.416 kb on + strand, within Shewana3_1720 at 2023.424 kb on - strand, within Shewana3_1720 at 2023.556 kb on + strand, within Shewana3_1720 at 2023.564 kb on - strand, within Shewana3_1720 at 2023.753 kb on + strand, within Shewana3_1720 at 2024.349 kb on - strand, within Shewana3_1721 at 2024.404 kb on - strand, within Shewana3_1721 at 2024.538 kb on - strand, within Shewana3_1721 at 2024.540 kb on + strand, within Shewana3_1721 at 2024.657 kb on + strand, within Shewana3_1721 at 2024.753 kb on - strand, within Shewana3_1721 at 2024.755 kb on + strand, within Shewana3_1721 at 2024.832 kb on + strand, within Shewana3_1721 at 2024.857 kb on + strand, within Shewana3_1721 at 2024.932 kb on + strand, within Shewana3_1721 at 2025.560 kb on + strand, within Shewana3_1722 at 2025.614 kb on + strand, within Shewana3_1722 at 2025.873 kb on + strand, within Shewana3_1722
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,023,143 + Shewana3_1720 0.19 +1.2 2,023,416 + Shewana3_1720 0.47 -0.2 2,023,424 - Shewana3_1720 0.48 -0.0 2,023,556 + Shewana3_1720 0.62 -1.1 2,023,564 - Shewana3_1720 0.63 +0.3 2,023,753 + Shewana3_1720 0.83 +1.0 2,024,349 - Shewana3_1721 0.28 -0.4 2,024,404 - Shewana3_1721 0.32 -0.3 2,024,538 - Shewana3_1721 0.43 -1.1 2,024,540 + Shewana3_1721 0.43 +1.3 2,024,657 + Shewana3_1721 0.52 +1.1 2,024,753 - Shewana3_1721 0.60 -1.0 2,024,755 + Shewana3_1721 0.60 -1.0 2,024,832 + Shewana3_1721 0.66 -1.4 2,024,857 + Shewana3_1721 0.68 -1.6 2,024,932 + Shewana3_1721 0.74 -0.0 2,025,560 + Shewana3_1722 0.27 +0.3 2,025,614 + Shewana3_1722 0.34 -0.7 2,025,873 + Shewana3_1722 0.72 +0.3
Or see this region's nucleotide sequence