Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1721

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1720 and Shewana3_1721 are separated by 80 nucleotidesShewana3_1721 and Shewana3_1722 are separated by 116 nucleotidesShewana3_1722 and Shewana3_1723 are separated by 15 nucleotides Shewana3_1720: Shewana3_1720 - magnesium and cobalt transport protein CorA (RefSeq), at 2,022,967 to 2,023,914 _1720 Shewana3_1721: Shewana3_1721 - metal dependent phosphohydrolase (RefSeq), at 2,023,995 to 2,025,257 _1721 Shewana3_1722: Shewana3_1722 - prolyl 4-hydroxylase, alpha subunit (RefSeq), at 2,025,374 to 2,026,069 _1722 Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434 _1723 Position (kb) 2023 2024 2025 2026Strain fitness (log2 ratio) -1 0 1at 2023.143 kb on + strand, within Shewana3_1720at 2023.416 kb on + strand, within Shewana3_1720at 2023.424 kb on - strand, within Shewana3_1720at 2023.556 kb on + strand, within Shewana3_1720at 2023.564 kb on - strand, within Shewana3_1720at 2023.753 kb on + strand, within Shewana3_1720at 2024.349 kb on - strand, within Shewana3_1721at 2024.404 kb on - strand, within Shewana3_1721at 2024.538 kb on - strand, within Shewana3_1721at 2024.540 kb on + strand, within Shewana3_1721at 2024.657 kb on + strand, within Shewana3_1721at 2024.753 kb on - strand, within Shewana3_1721at 2024.755 kb on + strand, within Shewana3_1721at 2024.832 kb on + strand, within Shewana3_1721at 2024.857 kb on + strand, within Shewana3_1721at 2024.932 kb on + strand, within Shewana3_1721at 2025.560 kb on + strand, within Shewana3_1722at 2025.614 kb on + strand, within Shewana3_1722at 2025.873 kb on + strand, within Shewana3_1722

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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2,023,143 + Shewana3_1720 0.19 +1.2
2,023,416 + Shewana3_1720 0.47 -0.2
2,023,424 - Shewana3_1720 0.48 -0.0
2,023,556 + Shewana3_1720 0.62 -1.1
2,023,564 - Shewana3_1720 0.63 +0.3
2,023,753 + Shewana3_1720 0.83 +1.0
2,024,349 - Shewana3_1721 0.28 -0.4
2,024,404 - Shewana3_1721 0.32 -0.3
2,024,538 - Shewana3_1721 0.43 -1.1
2,024,540 + Shewana3_1721 0.43 +1.3
2,024,657 + Shewana3_1721 0.52 +1.1
2,024,753 - Shewana3_1721 0.60 -1.0
2,024,755 + Shewana3_1721 0.60 -1.0
2,024,832 + Shewana3_1721 0.66 -1.4
2,024,857 + Shewana3_1721 0.68 -1.6
2,024,932 + Shewana3_1721 0.74 -0.0
2,025,560 + Shewana3_1722 0.27 +0.3
2,025,614 + Shewana3_1722 0.34 -0.7
2,025,873 + Shewana3_1722 0.72 +0.3

Or see this region's nucleotide sequence