Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1691
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,988,086 | + | Shewana3_1690 | 0.77 | -0.0 | |
1,988,135 | - | Shewana3_1690 | 0.78 | -0.1 | |
1,988,301 | - | Shewana3_1690 | 0.82 | -1.6 | |
1,988,396 | - | Shewana3_1690 | 0.84 | -1.5 | |
1,988,409 | + | Shewana3_1690 | 0.85 | -0.4 | |
1,988,506 | + | Shewana3_1690 | 0.87 | +1.3 | |
1,988,516 | + | Shewana3_1690 | 0.88 | -0.6 | |
1,988,938 | + | -0.3 | |||
1,989,439 | + | Shewana3_1691 | 0.40 | -0.3 | |
1,989,712 | - | Shewana3_1691 | 0.71 | -1.0 | |
1,989,876 | - | Shewana3_1691 | 0.90 | +0.3 | |
1,989,895 | - | -0.0 | |||
1,989,895 | - | +0.7 | |||
1,989,987 | + | -0.0 | |||
1,990,047 | + | -0.5 | |||
1,990,047 | + | +2.3 | |||
1,990,068 | + | -0.2 | |||
1,990,073 | + | +1.8 | |||
1,990,081 | - | -0.0 | |||
1,990,191 | + | +1.3 | |||
1,990,199 | - | +0.7 | |||
1,990,322 | + | Shewana3_1692 | 0.11 | -0.0 | |
1,990,335 | - | Shewana3_1692 | 0.12 | -1.2 | |
1,990,479 | - | Shewana3_1692 | 0.23 | -1.9 | |
1,990,637 | + | Shewana3_1692 | 0.35 | +0.5 | |
1,990,938 | + | Shewana3_1692 | 0.58 | -1.0 |
Or see this region's nucleotide sequence