Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1569

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1568 and Shewana3_1569 are separated by 92 nucleotidesShewana3_1569 and Shewana3_1570 are separated by 225 nucleotidesShewana3_1570 and Shewana3_1571 are separated by 210 nucleotides Shewana3_1568: Shewana3_1568 - cell division protein ZipA (RefSeq), at 1,834,654 to 1,835,694 _1568 Shewana3_1569: Shewana3_1569 - DNA ligase, NAD-dependent (RefSeq), at 1,835,787 to 1,837,862 _1569 Shewana3_1570: Shewana3_1570 - hypothetical protein (RefSeq), at 1,838,088 to 1,838,582 _1570 Shewana3_1571: Shewana3_1571 - metal dependent phosphohydrolase (RefSeq), at 1,838,793 to 1,839,998 _1571 Position (kb) 1835 1836 1837 1838Strain fitness (log2 ratio) -1 0 1at 1837.886 kb on + strandat 1838.254 kb on - strand, within Shewana3_1570at 1838.291 kb on + strand, within Shewana3_1570at 1838.311 kb on + strand, within Shewana3_1570at 1838.489 kb on - strand, within Shewana3_1570at 1838.639 kb on - strandat 1838.704 kb on + strandat 1838.783 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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1,837,886 + -0.9
1,838,254 - Shewana3_1570 0.34 +1.2
1,838,291 + Shewana3_1570 0.41 +0.7
1,838,311 + Shewana3_1570 0.45 -0.3
1,838,489 - Shewana3_1570 0.81 +0.6
1,838,639 - +0.2
1,838,704 + -1.0
1,838,783 + +1.2

Or see this region's nucleotide sequence