Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1506 and Shewana3_1507 are separated by 88 nucleotides Shewana3_1507 and Shewana3_1508 are separated by 84 nucleotides
Shewana3_1506: Shewana3_1506 - ferric iron reductase (RefSeq), at 1,752,492 to 1,753,526
_1506
Shewana3_1507: Shewana3_1507 - TonB-dependent siderophore receptor (RefSeq), at 1,753,615 to 1,755,828
_1507
Shewana3_1508: Shewana3_1508 - IucA/IucC family protein (RefSeq), at 1,755,913 to 1,757,808
_1508
Position (kb)
1753
1754
1755
1756 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1752.657 kb on - strand, within Shewana3_1506 at 1752.772 kb on + strand, within Shewana3_1506 at 1753.022 kb on + strand, within Shewana3_1506 at 1753.074 kb on + strand, within Shewana3_1506 at 1753.110 kb on + strand, within Shewana3_1506 at 1753.123 kb on + strand, within Shewana3_1506 at 1753.131 kb on - strand, within Shewana3_1506 at 1753.215 kb on - strand, within Shewana3_1506 at 1753.429 kb on - strand at 1753.497 kb on + strand at 1753.600 kb on + strand at 1753.797 kb on - strand at 1753.810 kb on + strand at 1753.818 kb on - strand at 1754.041 kb on + strand, within Shewana3_1507 at 1754.098 kb on + strand, within Shewana3_1507 at 1754.110 kb on - strand, within Shewana3_1507 at 1754.157 kb on + strand, within Shewana3_1507 at 1754.252 kb on - strand, within Shewana3_1507 at 1754.349 kb on + strand, within Shewana3_1507 at 1754.608 kb on + strand, within Shewana3_1507 at 1754.680 kb on + strand, within Shewana3_1507 at 1754.719 kb on - strand, within Shewana3_1507 at 1754.727 kb on - strand, within Shewana3_1507 at 1754.771 kb on + strand, within Shewana3_1507 at 1754.850 kb on + strand, within Shewana3_1507 at 1754.866 kb on + strand, within Shewana3_1507 at 1755.198 kb on + strand, within Shewana3_1507 at 1755.348 kb on + strand, within Shewana3_1507 at 1755.356 kb on - strand, within Shewana3_1507 at 1755.726 kb on + strand at 1755.772 kb on - strand at 1755.883 kb on + strand at 1755.889 kb on + strand at 1755.908 kb on - strand at 1755.918 kb on - strand at 1755.957 kb on + strand at 1755.971 kb on - strand at 1756.303 kb on + strand, within Shewana3_1508 at 1756.336 kb on + strand, within Shewana3_1508 at 1756.344 kb on - strand, within Shewana3_1508 at 1756.506 kb on + strand, within Shewana3_1508 at 1756.762 kb on - strand, within Shewana3_1508 at 1756.790 kb on + strand, within Shewana3_1508
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,752,657 - Shewana3_1506 0.16 -2.4 1,752,772 + Shewana3_1506 0.27 -0.3 1,753,022 + Shewana3_1506 0.51 +0.9 1,753,074 + Shewana3_1506 0.56 +1.5 1,753,110 + Shewana3_1506 0.60 -0.3 1,753,123 + Shewana3_1506 0.61 -0.4 1,753,131 - Shewana3_1506 0.62 +1.6 1,753,215 - Shewana3_1506 0.70 +0.2 1,753,429 - -1.6 1,753,497 + -1.5 1,753,600 + +0.5 1,753,797 - -0.6 1,753,810 + +0.3 1,753,818 - +1.4 1,754,041 + Shewana3_1507 0.19 -0.1 1,754,098 + Shewana3_1507 0.22 -0.4 1,754,110 - Shewana3_1507 0.22 +0.6 1,754,157 + Shewana3_1507 0.24 -0.9 1,754,252 - Shewana3_1507 0.29 +0.6 1,754,349 + Shewana3_1507 0.33 -0.0 1,754,608 + Shewana3_1507 0.45 -1.2 1,754,680 + Shewana3_1507 0.48 +0.4 1,754,719 - Shewana3_1507 0.50 -0.6 1,754,727 - Shewana3_1507 0.50 +2.2 1,754,771 + Shewana3_1507 0.52 -0.1 1,754,850 + Shewana3_1507 0.56 -1.5 1,754,866 + Shewana3_1507 0.57 -0.6 1,755,198 + Shewana3_1507 0.71 +0.2 1,755,348 + Shewana3_1507 0.78 +0.1 1,755,356 - Shewana3_1507 0.79 -0.1 1,755,726 + +1.0 1,755,772 - +0.6 1,755,883 + -1.3 1,755,889 + +0.6 1,755,908 - -0.8 1,755,918 - -0.2 1,755,957 + +1.0 1,755,971 - -0.2 1,756,303 + Shewana3_1508 0.21 -1.1 1,756,336 + Shewana3_1508 0.22 +0.2 1,756,344 - Shewana3_1508 0.23 -0.6 1,756,506 + Shewana3_1508 0.31 +1.4 1,756,762 - Shewana3_1508 0.45 +0.6 1,756,790 + Shewana3_1508 0.46 -0.5
Or see this region's nucleotide sequence