Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1460
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,692,220 | + | Shewana3_1459 | 0.24 | +2.4 | |
1,692,228 | + | Shewana3_1459 | 0.25 | -0.6 | |
1,692,398 | - | Shewana3_1459 | 0.43 | -1.8 | |
1,692,584 | + | Shewana3_1459 | 0.62 | -1.1 | |
1,692,648 | - | Shewana3_1459 | 0.69 | +2.0 | |
1,692,843 | + | Shewana3_1459 | 0.89 | -0.7 | |
1,693,198 | + | -0.6 | |||
1,693,317 | + | +0.5 | |||
1,693,356 | - | fadI | Shewana3_1460 | 0.11 | +1.0 |
1,693,614 | + | fadI | Shewana3_1460 | 0.30 | -0.6 |
1,693,643 | + | fadI | Shewana3_1460 | 0.32 | -0.3 |
1,693,902 | - | fadI | Shewana3_1460 | 0.52 | -0.3 |
1,693,992 | - | fadI | Shewana3_1460 | 0.59 | -0.1 |
1,694,044 | - | fadI | Shewana3_1460 | 0.63 | -0.3 |
1,694,080 | - | fadI | Shewana3_1460 | 0.66 | +0.3 |
1,694,626 | + | -0.9 | |||
1,694,670 | + | +1.6 | |||
1,694,860 | + | fadJ | Shewana3_1461 | 0.15 | -0.9 |
1,694,927 | - | fadJ | Shewana3_1461 | 0.18 | -0.9 |
1,695,006 | + | fadJ | Shewana3_1461 | 0.22 | +0.4 |
1,695,006 | + | fadJ | Shewana3_1461 | 0.22 | -1.2 |
1,695,029 | - | fadJ | Shewana3_1461 | 0.23 | +1.0 |
Or see this region's nucleotide sequence