Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1447 and Shewana3_1448 are separated by 182 nucleotides Shewana3_1448 and Shewana3_1449 are separated by 121 nucleotides Shewana3_1449 and Shewana3_1450 are separated by 100 nucleotides
Shewana3_1447: Shewana3_1447 - RND family efflux transporter MFP subunit (RefSeq), at 1,678,404 to 1,679,417
_1447
Shewana3_1448: Shewana3_1448 - hypothetical protein (RefSeq), at 1,679,600 to 1,680,352
_1448
Shewana3_1449: Shewana3_1449 - hypothetical protein (RefSeq), at 1,680,474 to 1,680,860
_1449
Shewana3_1450: Shewana3_1450 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,680,961 to 1,682,247
_1450
Position (kb)
1679
1680
1681 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1678.696 kb on - strand, within Shewana3_1447 at 1678.727 kb on - strand, within Shewana3_1447 at 1678.799 kb on + strand, within Shewana3_1447 at 1679.153 kb on + strand, within Shewana3_1447 at 1679.161 kb on - strand, within Shewana3_1447 at 1679.173 kb on - strand, within Shewana3_1447 at 1679.243 kb on + strand, within Shewana3_1447 at 1679.302 kb on - strand, within Shewana3_1447 at 1679.987 kb on - strand, within Shewana3_1448 at 1679.992 kb on - strand, within Shewana3_1448 at 1679.993 kb on - strand, within Shewana3_1448 at 1680.083 kb on + strand, within Shewana3_1448 at 1680.101 kb on - strand, within Shewana3_1448 at 1680.112 kb on + strand, within Shewana3_1448 at 1680.190 kb on - strand, within Shewana3_1448 at 1680.211 kb on - strand, within Shewana3_1448 at 1680.232 kb on + strand, within Shewana3_1448 at 1680.252 kb on - strand, within Shewana3_1448 at 1680.394 kb on - strand at 1680.462 kb on + strand at 1680.488 kb on + strand at 1680.496 kb on - strand at 1680.690 kb on + strand, within Shewana3_1449 at 1680.863 kb on + strand at 1680.957 kb on - strand at 1680.958 kb on - strand at 1680.959 kb on + strand at 1680.984 kb on - strand at 1680.989 kb on - strand at 1680.999 kb on - strand at 1681.258 kb on + strand, within Shewana3_1450 at 1681.271 kb on - strand, within Shewana3_1450 at 1681.301 kb on - strand, within Shewana3_1450
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,678,696 - Shewana3_1447 0.29 -2.0 1,678,727 - Shewana3_1447 0.32 -1.1 1,678,799 + Shewana3_1447 0.39 -0.6 1,679,153 + Shewana3_1447 0.74 -2.2 1,679,161 - Shewana3_1447 0.75 -1.6 1,679,173 - Shewana3_1447 0.76 -2.7 1,679,243 + Shewana3_1447 0.83 -1.3 1,679,302 - Shewana3_1447 0.89 -0.6 1,679,987 - Shewana3_1448 0.51 +2.0 1,679,992 - Shewana3_1448 0.52 -1.0 1,679,993 - Shewana3_1448 0.52 -1.8 1,680,083 + Shewana3_1448 0.64 -2.4 1,680,101 - Shewana3_1448 0.67 -2.1 1,680,112 + Shewana3_1448 0.68 +0.8 1,680,190 - Shewana3_1448 0.78 -1.9 1,680,211 - Shewana3_1448 0.81 -1.1 1,680,232 + Shewana3_1448 0.84 -0.3 1,680,252 - Shewana3_1448 0.87 +1.0 1,680,394 - -1.7 1,680,462 + +2.0 1,680,488 + -1.3 1,680,496 - -0.0 1,680,690 + Shewana3_1449 0.56 +0.1 1,680,863 + -0.5 1,680,957 - +1.6 1,680,958 - -0.3 1,680,959 + -1.3 1,680,984 - +0.5 1,680,989 - -0.1 1,680,999 - +0.9 1,681,258 + Shewana3_1450 0.23 +0.5 1,681,271 - Shewana3_1450 0.24 +0.6 1,681,301 - Shewana3_1450 0.26 -0.9
Or see this region's nucleotide sequence