Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1409

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1408 and Shewana3_1409 are separated by 171 nucleotidesShewana3_1409 and Shewana3_1410 are separated by 539 nucleotides Shewana3_1408: Shewana3_1408 - peptidyl-dipeptidase Dcp (RefSeq), at 1,626,427 to 1,628,577 _1408 Shewana3_1409: Shewana3_1409 - hypothetical protein (RefSeq), at 1,628,749 to 1,630,839 _1409 Shewana3_1410: Shewana3_1410 - thymidine kinase (RefSeq), at 1,631,379 to 1,631,957 _1410 Position (kb) 1628 1629 1630 1631Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1627.764 kb on + strand, within Shewana3_1408at 1627.772 kb on - strand, within Shewana3_1408at 1627.783 kb on + strand, within Shewana3_1408at 1627.860 kb on - strand, within Shewana3_1408at 1628.219 kb on + strand, within Shewana3_1408at 1628.266 kb on + strand, within Shewana3_1408at 1628.266 kb on + strand, within Shewana3_1408at 1628.308 kb on + strand, within Shewana3_1408at 1628.447 kb on + strandat 1628.628 kb on + strandat 1628.690 kb on + strandat 1628.697 kb on + strandat 1628.826 kb on - strandat 1628.866 kb on + strandat 1628.874 kb on - strandat 1629.065 kb on + strand, within Shewana3_1409at 1629.073 kb on - strand, within Shewana3_1409at 1629.086 kb on + strand, within Shewana3_1409at 1629.267 kb on + strand, within Shewana3_1409at 1629.380 kb on + strand, within Shewana3_1409at 1629.380 kb on + strand, within Shewana3_1409at 1629.388 kb on - strand, within Shewana3_1409at 1629.392 kb on + strand, within Shewana3_1409at 1629.392 kb on + strand, within Shewana3_1409at 1629.392 kb on + strand, within Shewana3_1409at 1629.426 kb on - strand, within Shewana3_1409at 1629.562 kb on - strand, within Shewana3_1409at 1629.722 kb on - strand, within Shewana3_1409at 1630.077 kb on + strand, within Shewana3_1409at 1630.148 kb on - strand, within Shewana3_1409at 1630.229 kb on - strand, within Shewana3_1409at 1630.333 kb on + strand, within Shewana3_1409at 1630.636 kb on + strandat 1630.665 kb on + strandat 1630.708 kb on - strandat 1631.144 kb on + strandat 1631.299 kb on - strandat 1631.431 kb on - strandat 1631.476 kb on + strand, within Shewana3_1410at 1631.634 kb on - strand, within Shewana3_1410

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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1,627,764 + Shewana3_1408 0.62 -0.8
1,627,772 - Shewana3_1408 0.63 +0.2
1,627,783 + Shewana3_1408 0.63 +0.7
1,627,860 - Shewana3_1408 0.67 -1.1
1,628,219 + Shewana3_1408 0.83 +0.4
1,628,266 + Shewana3_1408 0.85 -0.1
1,628,266 + Shewana3_1408 0.85 -0.6
1,628,308 + Shewana3_1408 0.87 +0.5
1,628,447 + -0.1
1,628,628 + -0.6
1,628,690 + +1.1
1,628,697 + +1.2
1,628,826 - +0.1
1,628,866 + -1.0
1,628,874 - +0.3
1,629,065 + Shewana3_1409 0.15 -0.2
1,629,073 - Shewana3_1409 0.15 -0.5
1,629,086 + Shewana3_1409 0.16 -0.3
1,629,267 + Shewana3_1409 0.25 +3.0
1,629,380 + Shewana3_1409 0.30 -2.5
1,629,380 + Shewana3_1409 0.30 +1.1
1,629,388 - Shewana3_1409 0.31 +1.1
1,629,392 + Shewana3_1409 0.31 -0.7
1,629,392 + Shewana3_1409 0.31 +0.7
1,629,392 + Shewana3_1409 0.31 -0.6
1,629,426 - Shewana3_1409 0.32 +0.1
1,629,562 - Shewana3_1409 0.39 -0.7
1,629,722 - Shewana3_1409 0.47 +0.1
1,630,077 + Shewana3_1409 0.64 -0.3
1,630,148 - Shewana3_1409 0.67 -0.8
1,630,229 - Shewana3_1409 0.71 +1.0
1,630,333 + Shewana3_1409 0.76 +0.1
1,630,636 + +2.3
1,630,665 + -1.4
1,630,708 - -0.6
1,631,144 + -1.5
1,631,299 - +1.6
1,631,431 - +2.0
1,631,476 + Shewana3_1410 0.17 +1.2
1,631,634 - Shewana3_1410 0.44 -2.3

Or see this region's nucleotide sequence