Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1394 and Shewana3_1395 are separated by 10 nucleotides Shewana3_1395 and Shewana3_1396 are separated by 151 nucleotides Shewana3_1396 and Shewana3_1397 are separated by 271 nucleotides
Shewana3_1394: Shewana3_1394 - hypothetical protein (RefSeq), at 1,610,032 to 1,610,820
_1394
Shewana3_1395: Shewana3_1395 - putative lipoprotein (RefSeq), at 1,610,831 to 1,611,541
_1395
Shewana3_1396: Shewana3_1396 - hypothetical protein (RefSeq), at 1,611,693 to 1,611,941
_1396
Shewana3_1397: Shewana3_1397 - patatin (RefSeq), at 1,612,213 to 1,613,337
_1397
Position (kb)
1611
1612 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1610.824 kb on + strand at 1611.335 kb on + strand, within Shewana3_1395 at 1611.402 kb on - strand, within Shewana3_1395 at 1611.414 kb on - strand, within Shewana3_1395 at 1611.456 kb on + strand at 1611.484 kb on + strand at 1611.717 kb on - strand at 1611.873 kb on - strand, within Shewana3_1396 at 1612.133 kb on - strand at 1612.133 kb on - strand at 1612.133 kb on - strand at 1612.141 kb on + strand at 1612.292 kb on + strand at 1612.387 kb on - strand, within Shewana3_1397 at 1612.422 kb on + strand, within Shewana3_1397 at 1612.460 kb on - strand, within Shewana3_1397
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,610,824 + +1.0 1,611,335 + Shewana3_1395 0.71 +1.0 1,611,402 - Shewana3_1395 0.80 +1.0 1,611,414 - Shewana3_1395 0.82 +2.0 1,611,456 + +2.0 1,611,484 + -0.6 1,611,717 - -0.8 1,611,873 - Shewana3_1396 0.72 -2.1 1,612,133 - +0.2 1,612,133 - -1.0 1,612,133 - +0.2 1,612,141 + +1.0 1,612,292 + -0.6 1,612,387 - Shewana3_1397 0.15 -0.6 1,612,422 + Shewana3_1397 0.19 -1.6 1,612,460 - Shewana3_1397 0.22 -2.2
Or see this region's nucleotide sequence