Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1362 and Shewana3_1363 are separated by 18 nucleotides Shewana3_1363 and Shewana3_1364 overlap by 8 nucleotides Shewana3_1364 and Shewana3_1365 are separated by 64 nucleotides
Shewana3_1362: Shewana3_1362 - CheA signal transduction histidine kinases (RefSeq), at 1,574,135 to 1,576,423
_1362
Shewana3_1363: Shewana3_1363 - chemotaxis-specific methylesterase (RefSeq), at 1,576,442 to 1,577,566
_1363
Shewana3_1364: Shewana3_1364 - hypothetical protein (RefSeq), at 1,577,559 to 1,578,095
_1364
Shewana3_1365: Shewana3_1365 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,578,160 to 1,578,951
_1365
Position (kb)
1576
1577
1578 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1575.612 kb on + strand, within Shewana3_1362 at 1575.657 kb on - strand, within Shewana3_1362 at 1576.050 kb on + strand, within Shewana3_1362 at 1576.098 kb on - strand, within Shewana3_1362 at 1576.129 kb on + strand, within Shewana3_1362 at 1576.137 kb on - strand, within Shewana3_1362 at 1576.137 kb on - strand, within Shewana3_1362 at 1576.360 kb on - strand at 1576.372 kb on + strand at 1576.382 kb on + strand at 1576.754 kb on + strand, within Shewana3_1363 at 1576.831 kb on - strand, within Shewana3_1363 at 1576.912 kb on - strand, within Shewana3_1363 at 1577.296 kb on + strand, within Shewana3_1363 at 1577.377 kb on + strand, within Shewana3_1363 at 1577.557 kb on - strand at 1577.704 kb on - strand, within Shewana3_1364 at 1577.836 kb on + strand, within Shewana3_1364 at 1577.844 kb on - strand, within Shewana3_1364 at 1578.064 kb on + strand at 1578.107 kb on + strand at 1578.254 kb on - strand, within Shewana3_1365 at 1578.293 kb on + strand, within Shewana3_1365 at 1578.402 kb on - strand, within Shewana3_1365 at 1578.453 kb on + strand, within Shewana3_1365 at 1578.485 kb on + strand, within Shewana3_1365
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,575,612 + Shewana3_1362 0.65 +1.4 1,575,657 - Shewana3_1362 0.66 -0.0 1,576,050 + Shewana3_1362 0.84 +1.1 1,576,098 - Shewana3_1362 0.86 +2.0 1,576,129 + Shewana3_1362 0.87 +1.7 1,576,137 - Shewana3_1362 0.87 +2.0 1,576,137 - Shewana3_1362 0.87 +1.0 1,576,360 - +1.0 1,576,372 + +1.7 1,576,382 + +3.0 1,576,754 + Shewana3_1363 0.28 +0.4 1,576,831 - Shewana3_1363 0.35 +0.4 1,576,912 - Shewana3_1363 0.42 +2.0 1,577,296 + Shewana3_1363 0.76 -0.0 1,577,377 + Shewana3_1363 0.83 +2.2 1,577,557 - -0.3 1,577,704 - Shewana3_1364 0.27 +1.0 1,577,836 + Shewana3_1364 0.52 +0.1 1,577,844 - Shewana3_1364 0.53 -3.4 1,578,064 + -0.1 1,578,107 + -0.1 1,578,254 - Shewana3_1365 0.12 -0.0 1,578,293 + Shewana3_1365 0.17 -1.0 1,578,402 - Shewana3_1365 0.31 +0.4 1,578,453 + Shewana3_1365 0.37 +1.1 1,578,485 + Shewana3_1365 0.41 +0.0
Or see this region's nucleotide sequence