Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1354
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,565,442 | + | +0.9 | |||
1,565,520 | - | +1.0 | |||
1,565,564 | - | Shewana3_1353 | 0.16 | -1.0 | |
1,565,833 | + | -0.0 | |||
1,565,923 | + | fliR | Shewana3_1354 | 0.16 | +2.0 |
1,565,969 | + | fliR | Shewana3_1354 | 0.22 | -2.0 |
1,566,111 | - | fliR | Shewana3_1354 | 0.40 | +1.0 |
1,566,222 | + | fliR | Shewana3_1354 | 0.54 | -0.7 |
1,566,294 | - | fliR | Shewana3_1354 | 0.63 | +1.0 |
1,566,330 | - | fliR | Shewana3_1354 | 0.67 | -0.9 |
1,566,340 | + | fliR | Shewana3_1354 | 0.68 | -2.2 |
1,566,741 | + | flhB | Shewana3_1355 | 0.12 | +0.3 |
1,566,834 | + | flhB | Shewana3_1355 | 0.20 | +0.7 |
1,566,834 | + | flhB | Shewana3_1355 | 0.20 | +1.0 |
1,566,842 | - | flhB | Shewana3_1355 | 0.21 | -0.9 |
1,567,313 | + | flhB | Shewana3_1355 | 0.62 | +1.1 |
1,567,415 | + | flhB | Shewana3_1355 | 0.71 | -2.4 |
1,567,429 | - | flhB | Shewana3_1355 | 0.73 | +2.6 |
1,567,478 | + | flhB | Shewana3_1355 | 0.77 | -0.0 |
Or see this region's nucleotide sequence