Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1270 and Shewana3_1271 are separated by 14 nucleotides Shewana3_1271 and Shewana3_1272 are separated by 6 nucleotides Shewana3_1272 and Shewana3_1273 are separated by 80 nucleotides Shewana3_1273 and Shewana3_1274 are separated by 36 nucleotides Shewana3_1274 and Shewana3_1275 are separated by 357 nucleotides
Shewana3_1270: Shewana3_1270 - major facilitator transporter (RefSeq), at 1,483,912 to 1,485,396
_1270
Shewana3_1271: Shewana3_1271 - LysR family transcriptional regulator (RefSeq), at 1,485,411 to 1,485,686
_1271
Shewana3_1272: Shewana3_1272 - hypothetical protein (RefSeq), at 1,485,693 to 1,485,914
_1272
Shewana3_1273: Shewana3_1273 - Smp-30/Cgr1 family protein (RefSeq), at 1,485,995 to 1,486,189
_1273
Shewana3_1274: Shewana3_1274 - Smp-30/Cgr1 family protein (RefSeq), at 1,486,226 to 1,486,606
_1274
Shewana3_1275: Shewana3_1275 - IclR family transcriptional regulator (RefSeq), at 1,486,964 to 1,487,641
_1275
Position (kb)
1486
1487 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1485.295 kb on + strand at 1485.529 kb on + strand, within Shewana3_1271 at 1485.529 kb on + strand, within Shewana3_1271 at 1485.675 kb on - strand at 1485.747 kb on - strand, within Shewana3_1272 at 1485.894 kb on - strand at 1485.942 kb on + strand at 1485.957 kb on + strand at 1485.967 kb on + strand at 1485.989 kb on + strand at 1486.008 kb on - strand at 1486.010 kb on + strand at 1486.018 kb on - strand, within Shewana3_1273 at 1486.077 kb on + strand, within Shewana3_1273 at 1486.086 kb on - strand, within Shewana3_1273 at 1486.334 kb on - strand, within Shewana3_1274 at 1486.359 kb on - strand, within Shewana3_1274 at 1486.359 kb on - strand, within Shewana3_1274 at 1486.430 kb on + strand, within Shewana3_1274 at 1486.438 kb on - strand, within Shewana3_1274 at 1486.635 kb on + strand at 1486.678 kb on + strand at 1486.730 kb on - strand at 1487.036 kb on - strand, within Shewana3_1275 at 1487.051 kb on + strand, within Shewana3_1275 at 1487.070 kb on - strand, within Shewana3_1275 at 1487.187 kb on + strand, within Shewana3_1275 at 1487.188 kb on - strand, within Shewana3_1275 at 1487.293 kb on - strand, within Shewana3_1275 at 1487.463 kb on - strand, within Shewana3_1275
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,485,295 + -0.3 1,485,529 + Shewana3_1271 0.43 +0.4 1,485,529 + Shewana3_1271 0.43 +1.7 1,485,675 - -0.3 1,485,747 - Shewana3_1272 0.24 -1.9 1,485,894 - -2.3 1,485,942 + +0.1 1,485,957 + +0.6 1,485,967 + -0.8 1,485,989 + -1.7 1,486,008 - -2.3 1,486,010 + -0.5 1,486,018 - Shewana3_1273 0.12 -2.5 1,486,077 + Shewana3_1273 0.42 -1.1 1,486,086 - Shewana3_1273 0.47 -2.7 1,486,334 - Shewana3_1274 0.28 -2.7 1,486,359 - Shewana3_1274 0.35 -1.0 1,486,359 - Shewana3_1274 0.35 -1.2 1,486,430 + Shewana3_1274 0.54 -0.2 1,486,438 - Shewana3_1274 0.56 -2.3 1,486,635 + -1.6 1,486,678 + -0.2 1,486,730 - +0.3 1,487,036 - Shewana3_1275 0.11 -0.1 1,487,051 + Shewana3_1275 0.13 -0.7 1,487,070 - Shewana3_1275 0.16 +1.9 1,487,187 + Shewana3_1275 0.33 +0.1 1,487,188 - Shewana3_1275 0.33 -0.2 1,487,293 - Shewana3_1275 0.49 -2.5 1,487,463 - Shewana3_1275 0.74 -1.9
Or see this region's nucleotide sequence