Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1218 and Shewana3_1219 are separated by 167 nucleotides Shewana3_1219 and Shewana3_1220 are separated by 63 nucleotides Shewana3_1220 and Shewana3_1221 are separated by 94 nucleotides Shewana3_1221 and Shewana3_1222 are separated by 10 nucleotides
Shewana3_1218: Shewana3_1218 - NrfJ-related protein (RefSeq), at 1,422,355 to 1,422,657
_1218
Shewana3_1219: Shewana3_1219 - acetyltransferase (RefSeq), at 1,422,825 to 1,423,346
_1219
Shewana3_1220: Shewana3_1220 - acetyltransferase (RefSeq), at 1,423,410 to 1,423,940
_1220
Shewana3_1221: Shewana3_1221 - pirin domain-containing protein (RefSeq), at 1,424,035 to 1,424,730
_1221
Shewana3_1222: Shewana3_1222 - DoxX family protein (RefSeq), at 1,424,741 to 1,425,184
_1222
Position (kb)
1423
1424 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1422.472 kb on + strand, within Shewana3_1218 at 1422.887 kb on - strand, within Shewana3_1219 at 1422.956 kb on + strand, within Shewana3_1219 at 1422.964 kb on - strand, within Shewana3_1219 at 1422.964 kb on - strand, within Shewana3_1219 at 1423.111 kb on + strand, within Shewana3_1219 at 1423.158 kb on - strand, within Shewana3_1219 at 1423.270 kb on - strand, within Shewana3_1219 at 1423.471 kb on + strand, within Shewana3_1220 at 1423.473 kb on + strand, within Shewana3_1220 at 1423.630 kb on + strand, within Shewana3_1220 at 1423.645 kb on - strand, within Shewana3_1220 at 1423.709 kb on - strand, within Shewana3_1220 at 1423.741 kb on - strand, within Shewana3_1220 at 1423.763 kb on - strand, within Shewana3_1220 at 1423.896 kb on + strand at 1423.923 kb on + strand at 1423.961 kb on + strand at 1424.022 kb on + strand at 1424.116 kb on + strand, within Shewana3_1221 at 1424.200 kb on - strand, within Shewana3_1221 at 1424.383 kb on - strand, within Shewana3_1221 at 1424.479 kb on + strand, within Shewana3_1221 at 1424.487 kb on - strand, within Shewana3_1221 at 1424.697 kb on + strand at 1424.705 kb on - strand at 1424.799 kb on + strand, within Shewana3_1222 at 1424.807 kb on - strand, within Shewana3_1222 at 1424.832 kb on - strand, within Shewana3_1222
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,422,472 + Shewana3_1218 0.39 +0.7 1,422,887 - Shewana3_1219 0.12 +1.8 1,422,956 + Shewana3_1219 0.25 -2.1 1,422,964 - Shewana3_1219 0.27 -1.1 1,422,964 - Shewana3_1219 0.27 +1.2 1,423,111 + Shewana3_1219 0.55 -1.7 1,423,158 - Shewana3_1219 0.64 -0.9 1,423,270 - Shewana3_1219 0.85 +0.9 1,423,471 + Shewana3_1220 0.11 -0.9 1,423,473 + Shewana3_1220 0.12 +0.5 1,423,630 + Shewana3_1220 0.41 -0.2 1,423,645 - Shewana3_1220 0.44 -0.9 1,423,709 - Shewana3_1220 0.56 -0.8 1,423,741 - Shewana3_1220 0.62 +1.9 1,423,763 - Shewana3_1220 0.66 -1.4 1,423,896 + -0.9 1,423,923 + -0.4 1,423,961 + +2.5 1,424,022 + -0.6 1,424,116 + Shewana3_1221 0.12 +0.4 1,424,200 - Shewana3_1221 0.24 -0.5 1,424,383 - Shewana3_1221 0.50 -0.5 1,424,479 + Shewana3_1221 0.64 -0.3 1,424,487 - Shewana3_1221 0.65 -1.5 1,424,697 + -2.9 1,424,705 - -1.1 1,424,799 + Shewana3_1222 0.13 -0.6 1,424,807 - Shewana3_1222 0.15 +1.3 1,424,832 - Shewana3_1222 0.20 +0.8
Or see this region's nucleotide sequence