Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1210 and Shewana3_1211 are separated by 62 nucleotides Shewana3_1211 and Shewana3_1212 are separated by 103 nucleotides Shewana3_1212 and Shewana3_1213 overlap by 4 nucleotides
Shewana3_1210: Shewana3_1210 - hypothetical protein (RefSeq), at 1,414,699 to 1,415,238
_1210
Shewana3_1211: Shewana3_1211 - hypothetical protein (RefSeq), at 1,415,301 to 1,416,125
_1211
Shewana3_1212: Shewana3_1212 - diguanylate cyclase (RefSeq), at 1,416,229 to 1,417,965
_1212
Shewana3_1213: Shewana3_1213 - extracellular solute-binding protein (RefSeq), at 1,417,962 to 1,419,455
_1213
Position (kb)
1416
1417
1418 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1415.500 kb on - strand, within Shewana3_1211 at 1415.779 kb on + strand, within Shewana3_1211 at 1416.136 kb on + strand at 1416.594 kb on + strand, within Shewana3_1212 at 1416.602 kb on - strand, within Shewana3_1212 at 1416.720 kb on + strand, within Shewana3_1212 at 1416.758 kb on + strand, within Shewana3_1212 at 1416.758 kb on + strand, within Shewana3_1212 at 1416.758 kb on + strand, within Shewana3_1212 at 1416.758 kb on + strand, within Shewana3_1212 at 1416.758 kb on + strand, within Shewana3_1212 at 1416.758 kb on + strand, within Shewana3_1212 at 1416.789 kb on + strand, within Shewana3_1212 at 1417.014 kb on - strand, within Shewana3_1212 at 1417.222 kb on + strand, within Shewana3_1212 at 1417.222 kb on + strand, within Shewana3_1212 at 1417.230 kb on - strand, within Shewana3_1212 at 1417.235 kb on - strand, within Shewana3_1212 at 1417.272 kb on + strand, within Shewana3_1212 at 1417.435 kb on - strand, within Shewana3_1212 at 1417.623 kb on + strand, within Shewana3_1212 at 1417.725 kb on + strand, within Shewana3_1212 at 1417.762 kb on - strand, within Shewana3_1212 at 1417.883 kb on + strand at 1417.891 kb on - strand at 1417.982 kb on - strand at 1418.102 kb on - strand at 1418.102 kb on - strand at 1418.102 kb on - strand at 1418.112 kb on - strand, within Shewana3_1213 at 1418.136 kb on + strand, within Shewana3_1213 at 1418.153 kb on - strand, within Shewana3_1213 at 1418.297 kb on + strand, within Shewana3_1213 at 1418.371 kb on - strand, within Shewana3_1213 at 1418.371 kb on - strand, within Shewana3_1213 at 1418.555 kb on + strand, within Shewana3_1213 at 1418.624 kb on + strand, within Shewana3_1213 at 1418.677 kb on - strand, within Shewana3_1213 at 1418.891 kb on - strand, within Shewana3_1213 at 1418.907 kb on - strand, within Shewana3_1213
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,415,500 - Shewana3_1211 0.24 -1.3 1,415,779 + Shewana3_1211 0.58 -1.8 1,416,136 + +0.5 1,416,594 + Shewana3_1212 0.21 +2.4 1,416,602 - Shewana3_1212 0.21 -0.6 1,416,720 + Shewana3_1212 0.28 -1.1 1,416,758 + Shewana3_1212 0.30 +0.9 1,416,758 + Shewana3_1212 0.30 +0.9 1,416,758 + Shewana3_1212 0.30 -1.7 1,416,758 + Shewana3_1212 0.30 +0.9 1,416,758 + Shewana3_1212 0.30 -0.6 1,416,758 + Shewana3_1212 0.30 -1.3 1,416,789 + Shewana3_1212 0.32 -0.1 1,417,014 - Shewana3_1212 0.45 -1.3 1,417,222 + Shewana3_1212 0.57 -2.7 1,417,222 + Shewana3_1212 0.57 -0.3 1,417,230 - Shewana3_1212 0.58 -0.9 1,417,235 - Shewana3_1212 0.58 +0.3 1,417,272 + Shewana3_1212 0.60 -0.7 1,417,435 - Shewana3_1212 0.69 -0.8 1,417,623 + Shewana3_1212 0.80 +0.2 1,417,725 + Shewana3_1212 0.86 -0.7 1,417,762 - Shewana3_1212 0.88 -1.7 1,417,883 + -0.4 1,417,891 - -1.3 1,417,982 - -1.8 1,418,102 - -0.4 1,418,102 - -0.1 1,418,102 - -1.4 1,418,112 - Shewana3_1213 0.10 +1.0 1,418,136 + Shewana3_1213 0.12 +1.2 1,418,153 - Shewana3_1213 0.13 -0.5 1,418,297 + Shewana3_1213 0.22 -1.1 1,418,371 - Shewana3_1213 0.27 -2.2 1,418,371 - Shewana3_1213 0.27 +0.4 1,418,555 + Shewana3_1213 0.40 +1.2 1,418,624 + Shewana3_1213 0.44 -0.3 1,418,677 - Shewana3_1213 0.48 -0.4 1,418,891 - Shewana3_1213 0.62 -2.1 1,418,907 - Shewana3_1213 0.63 +0.1
Or see this region's nucleotide sequence