Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1162 and Shewana3_1163 are separated by 268 nucleotides Shewana3_1163 and Shewana3_1164 are separated by 201 nucleotides Shewana3_1164 and Shewana3_1165 are separated by 72 nucleotides
Shewana3_1162: Shewana3_1162 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,372,641 to 1,373,870
_1162
Shewana3_1163: Shewana3_1163 - hypothetical protein (RefSeq), at 1,374,139 to 1,374,648
_1163
Shewana3_1164: Shewana3_1164 - hypothetical protein (RefSeq), at 1,374,850 to 1,375,803
_1164
Shewana3_1165: Shewana3_1165 - MerR family transcriptional regulator (RefSeq), at 1,375,876 to 1,376,934
_1165
Position (kb)
1374
1375
1376 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1374.007 kb on - strand at 1374.248 kb on + strand, within Shewana3_1163 at 1374.396 kb on + strand, within Shewana3_1163 at 1375.093 kb on - strand, within Shewana3_1164 at 1375.156 kb on + strand, within Shewana3_1164 at 1375.262 kb on + strand, within Shewana3_1164 at 1375.680 kb on + strand, within Shewana3_1164 at 1375.816 kb on + strand at 1375.816 kb on + strand at 1375.816 kb on + strand at 1375.816 kb on + strand at 1375.816 kb on + strand at 1375.816 kb on + strand at 1375.824 kb on - strand at 1375.824 kb on - strand at 1375.824 kb on - strand at 1375.961 kb on + strand at 1375.982 kb on + strand, within Shewana3_1165 at 1375.982 kb on + strand, within Shewana3_1165 at 1375.997 kb on + strand, within Shewana3_1165 at 1376.005 kb on - strand, within Shewana3_1165 at 1376.005 kb on - strand, within Shewana3_1165 at 1376.115 kb on + strand, within Shewana3_1165 at 1376.162 kb on + strand, within Shewana3_1165 at 1376.170 kb on - strand, within Shewana3_1165 at 1376.206 kb on + strand, within Shewana3_1165 at 1376.214 kb on - strand, within Shewana3_1165 at 1376.223 kb on + strand, within Shewana3_1165 at 1376.313 kb on + strand, within Shewana3_1165 at 1376.321 kb on - strand, within Shewana3_1165 at 1376.343 kb on - strand, within Shewana3_1165 at 1376.428 kb on + strand, within Shewana3_1165 at 1376.473 kb on + strand, within Shewana3_1165 at 1376.511 kb on + strand, within Shewana3_1165 at 1376.639 kb on + strand, within Shewana3_1165 at 1376.669 kb on - strand, within Shewana3_1165
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,374,007 - +0.1 1,374,248 + Shewana3_1163 0.21 -0.3 1,374,396 + Shewana3_1163 0.50 +1.4 1,375,093 - Shewana3_1164 0.25 -0.8 1,375,156 + Shewana3_1164 0.32 -1.6 1,375,262 + Shewana3_1164 0.43 -1.1 1,375,680 + Shewana3_1164 0.87 +1.1 1,375,816 + -1.9 1,375,816 + +0.5 1,375,816 + -0.4 1,375,816 + +0.3 1,375,816 + +1.2 1,375,816 + -0.2 1,375,824 - -2.0 1,375,824 - -0.6 1,375,824 - -2.1 1,375,961 + +0.4 1,375,982 + Shewana3_1165 0.10 +2.0 1,375,982 + Shewana3_1165 0.10 +0.0 1,375,997 + Shewana3_1165 0.11 +1.3 1,376,005 - Shewana3_1165 0.12 +0.0 1,376,005 - Shewana3_1165 0.12 +0.4 1,376,115 + Shewana3_1165 0.23 -0.3 1,376,162 + Shewana3_1165 0.27 +0.0 1,376,170 - Shewana3_1165 0.28 +2.0 1,376,206 + Shewana3_1165 0.31 +2.0 1,376,214 - Shewana3_1165 0.32 -0.8 1,376,223 + Shewana3_1165 0.33 +0.0 1,376,313 + Shewana3_1165 0.41 +1.4 1,376,321 - Shewana3_1165 0.42 -1.0 1,376,343 - Shewana3_1165 0.44 -0.6 1,376,428 + Shewana3_1165 0.52 +1.5 1,376,473 + Shewana3_1165 0.56 +0.4 1,376,511 + Shewana3_1165 0.60 +1.1 1,376,639 + Shewana3_1165 0.72 +0.5 1,376,669 - Shewana3_1165 0.75 -3.3
Or see this region's nucleotide sequence