Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1093
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,285,568 | + | +3.2 | |||
| 1,285,660 | + | Shewana3_1092 | 0.18 | -2.5 | |
| 1,285,724 | - | Shewana3_1092 | 0.25 | -2.0 | |
| 1,285,739 | + | Shewana3_1092 | 0.26 | -1.4 | |
| 1,286,372 | - | Shewana3_1092 | 0.89 | +1.0 | |
| 1,286,620 | - | +0.3 | |||
| 1,286,689 | + | -2.0 | |||
| 1,287,057 | - | Shewana3_1093 | 0.30 | +2.0 | |
| 1,287,074 | + | Shewana3_1093 | 0.31 | -0.3 | |
| 1,287,376 | - | Shewana3_1093 | 0.49 | +1.5 | |
| 1,287,689 | - | Shewana3_1093 | 0.68 | +0.3 | |
| 1,287,808 | - | Shewana3_1093 | 0.75 | +0.6 | |
| 1,287,974 | + | Shewana3_1093 | 0.85 | -2.0 | |
| 1,288,084 | - | +0.7 | |||
| 1,288,105 | + | -1.4 | |||
| 1,288,207 | + | -2.8 | |||
| 1,288,295 | + | +0.1 | |||
| 1,288,368 | + | +0.4 | |||
| 1,288,376 | - | -2.6 | |||
| 1,288,485 | - | -3.8 | |||
| 1,288,497 | - | +1.0 | |||
| 1,288,560 | + | glyA | Shewana3_1094 | 0.11 | -0.1 |
| 1,288,612 | + | glyA | Shewana3_1094 | 0.15 | +1.0 |
| 1,288,637 | + | glyA | Shewana3_1094 | 0.17 | +2.2 |
| 1,288,645 | - | glyA | Shewana3_1094 | 0.18 | -0.3 |
| 1,288,806 | - | glyA | Shewana3_1094 | 0.31 | +1.0 |
| 1,288,819 | - | glyA | Shewana3_1094 | 0.32 | -0.4 |
| 1,288,822 | - | glyA | Shewana3_1094 | 0.32 | -0.4 |
| 1,288,909 | + | glyA | Shewana3_1094 | 0.39 | +0.5 |
Or see this region's nucleotide sequence