Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1087 and Shewana3_1088 are separated by 22 nucleotides Shewana3_1088 and Shewana3_1089 are separated by 128 nucleotides Shewana3_1089 and Shewana3_1090 are separated by 112 nucleotides
Shewana3_1087: Shewana3_1087 - undecaprenol kinase., rRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,278,278 to 1,281,949
_1087
Shewana3_1088: Shewana3_1088 - hypothetical protein (RefSeq), at 1,281,972 to 1,282,307
_1088
Shewana3_1089: Shewana3_1089 - putative protein-disulfide isomerase (RefSeq), at 1,282,436 to 1,283,089
_1089
Shewana3_1090: Shewana3_1090 - beta-lactamase domain-containing protein (RefSeq), at 1,283,202 to 1,284,101
_1090
Position (kb)
1281
1282
1283 Strain fitness (log2 ratio)
-1
0
1
2 at 1281.243 kb on - strand, within Shewana3_1087 at 1281.304 kb on + strand, within Shewana3_1087 at 1281.329 kb on + strand, within Shewana3_1087 at 1281.356 kb on - strand, within Shewana3_1087 at 1281.538 kb on - strand, within Shewana3_1087 at 1281.752 kb on + strand at 1281.759 kb on - strand at 1281.822 kb on + strand at 1282.232 kb on - strand, within Shewana3_1088 at 1282.232 kb on - strand, within Shewana3_1088 at 1282.507 kb on + strand, within Shewana3_1089 at 1282.515 kb on - strand, within Shewana3_1089 at 1282.534 kb on - strand, within Shewana3_1089 at 1282.550 kb on + strand, within Shewana3_1089 at 1282.743 kb on - strand, within Shewana3_1089 at 1282.829 kb on + strand, within Shewana3_1089 at 1282.850 kb on - strand, within Shewana3_1089 at 1283.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,281,243 - Shewana3_1087 0.81 -1.2 1,281,304 + Shewana3_1087 0.82 -0.4 1,281,329 + Shewana3_1087 0.83 -0.4 1,281,356 - Shewana3_1087 0.84 +0.3 1,281,538 - Shewana3_1087 0.89 -1.2 1,281,752 + +0.3 1,281,759 - -0.0 1,281,822 + -1.2 1,282,232 - Shewana3_1088 0.77 -0.0 1,282,232 - Shewana3_1088 0.77 +2.0 1,282,507 + Shewana3_1089 0.11 -1.4 1,282,515 - Shewana3_1089 0.12 -0.6 1,282,534 - Shewana3_1089 0.15 -0.4 1,282,550 + Shewana3_1089 0.17 -0.2 1,282,743 - Shewana3_1089 0.47 -1.0 1,282,829 + Shewana3_1089 0.60 +2.7 1,282,850 - Shewana3_1089 0.63 -0.2 1,283,254 - -0.2
Or see this region's nucleotide sequence