Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1074 and Shewana3_1075 are separated by 203 nucleotides Shewana3_1075 and Shewana3_1076 are separated by 88 nucleotides Shewana3_1076 and Shewana3_1077 are separated by 359 nucleotides
Shewana3_1074: Shewana3_1074 - extracellular solute-binding protein (RefSeq), at 1,259,924 to 1,260,742
_1074
Shewana3_1075: Shewana3_1075 - OsmC family protein (RefSeq), at 1,260,946 to 1,261,374
_1075
Shewana3_1076: Shewana3_1076 - TetR family transcriptional regulator (RefSeq), at 1,261,463 to 1,262,083
_1076
Shewana3_1077: Shewana3_1077 - RND family efflux transporter MFP subunit (RefSeq), at 1,262,443 to 1,263,681
_1077
Position (kb)
1261
1262
1263 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1260.530 kb on + strand, within Shewana3_1074 at 1260.600 kb on + strand, within Shewana3_1074 at 1260.601 kb on - strand, within Shewana3_1074 at 1261.033 kb on + strand, within Shewana3_1075 at 1261.167 kb on + strand, within Shewana3_1075 at 1261.175 kb on - strand, within Shewana3_1075 at 1261.264 kb on + strand, within Shewana3_1075 at 1261.346 kb on + strand at 1261.346 kb on + strand at 1261.398 kb on + strand at 1261.567 kb on - strand, within Shewana3_1076 at 1261.652 kb on - strand, within Shewana3_1076 at 1261.796 kb on - strand, within Shewana3_1076 at 1261.949 kb on - strand, within Shewana3_1076 at 1261.959 kb on - strand, within Shewana3_1076 at 1261.999 kb on - strand, within Shewana3_1076 at 1262.455 kb on - strand at 1262.512 kb on + strand at 1262.556 kb on + strand at 1262.561 kb on + strand at 1262.579 kb on - strand, within Shewana3_1077 at 1262.713 kb on + strand, within Shewana3_1077 at 1262.757 kb on - strand, within Shewana3_1077 at 1262.784 kb on + strand, within Shewana3_1077 at 1262.789 kb on + strand, within Shewana3_1077 at 1262.822 kb on - strand, within Shewana3_1077 at 1263.040 kb on + strand, within Shewana3_1077 at 1263.040 kb on + strand, within Shewana3_1077 at 1263.040 kb on + strand, within Shewana3_1077 at 1263.048 kb on - strand, within Shewana3_1077 at 1263.048 kb on - strand, within Shewana3_1077 at 1263.048 kb on - strand, within Shewana3_1077 at 1263.058 kb on - strand, within Shewana3_1077
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,260,530 + Shewana3_1074 0.74 -0.8 1,260,600 + Shewana3_1074 0.83 -2.5 1,260,601 - Shewana3_1074 0.83 -1.6 1,261,033 + Shewana3_1075 0.20 -0.0 1,261,167 + Shewana3_1075 0.52 +0.3 1,261,175 - Shewana3_1075 0.53 -1.1 1,261,264 + Shewana3_1075 0.74 -0.5 1,261,346 + -0.8 1,261,346 + +2.6 1,261,398 + -3.5 1,261,567 - Shewana3_1076 0.17 +5.7 1,261,652 - Shewana3_1076 0.30 +5.4 1,261,796 - Shewana3_1076 0.54 +6.0 1,261,949 - Shewana3_1076 0.78 +5.6 1,261,959 - Shewana3_1076 0.80 +6.5 1,261,999 - Shewana3_1076 0.86 +5.8 1,262,455 - +1.0 1,262,512 + +0.7 1,262,556 + -0.2 1,262,561 + +0.3 1,262,579 - Shewana3_1077 0.11 +0.3 1,262,713 + Shewana3_1077 0.22 -1.5 1,262,757 - Shewana3_1077 0.25 -1.0 1,262,784 + Shewana3_1077 0.28 -0.3 1,262,789 + Shewana3_1077 0.28 +0.4 1,262,822 - Shewana3_1077 0.31 +0.3 1,263,040 + Shewana3_1077 0.48 +2.2 1,263,040 + Shewana3_1077 0.48 +0.5 1,263,040 + Shewana3_1077 0.48 -0.0 1,263,048 - Shewana3_1077 0.49 +0.2 1,263,048 - Shewana3_1077 0.49 -0.8 1,263,048 - Shewana3_1077 0.49 -0.6 1,263,058 - Shewana3_1077 0.50 -1.3
Or see this region's nucleotide sequence