Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0979

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0978 and Shewana3_0979 are separated by 310 nucleotidesShewana3_0979 and Shewana3_0980 are separated by 104 nucleotides Shewana3_0978: Shewana3_0978 - ribose-5-phosphate isomerase A (RefSeq), at 1,148,971 to 1,149,630 _0978 Shewana3_0979: Shewana3_0979 - hypothetical protein (RefSeq), at 1,149,941 to 1,150,867 _0979 Shewana3_0980: Shewana3_0980 - 3'-5' exonuclease (RefSeq), at 1,150,972 to 1,151,883 _0980 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -1 0 1at 1148.991 kb on - strandat 1149.757 kb on - strandat 1149.757 kb on - strandat 1149.852 kb on + strandat 1150.410 kb on + strand, within Shewana3_0979at 1150.549 kb on + strand, within Shewana3_0979at 1150.549 kb on + strand, within Shewana3_0979at 1150.763 kb on + strand, within Shewana3_0979at 1150.848 kb on + strandat 1150.864 kb on - strandat 1151.215 kb on - strand, within Shewana3_0980at 1151.366 kb on + strand, within Shewana3_0980at 1151.374 kb on - strand, within Shewana3_0980at 1151.374 kb on - strand, within Shewana3_0980at 1151.477 kb on - strand, within Shewana3_0980at 1151.539 kb on - strand, within Shewana3_0980at 1151.841 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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1,148,991 - +1.2
1,149,757 - +1.2
1,149,757 - -1.7
1,149,852 + -0.9
1,150,410 + Shewana3_0979 0.51 -0.4
1,150,549 + Shewana3_0979 0.66 +0.1
1,150,549 + Shewana3_0979 0.66 +0.8
1,150,763 + Shewana3_0979 0.89 +0.6
1,150,848 + -0.4
1,150,864 - -1.1
1,151,215 - Shewana3_0980 0.27 -1.1
1,151,366 + Shewana3_0980 0.43 -1.7
1,151,374 - Shewana3_0980 0.44 -0.2
1,151,374 - Shewana3_0980 0.44 -0.3
1,151,477 - Shewana3_0980 0.55 -1.4
1,151,539 - Shewana3_0980 0.62 -1.6
1,151,841 + -0.4

Or see this region's nucleotide sequence