Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0975 and Shewana3_0976 are separated by 78 nucleotides Shewana3_0976 and Shewana3_0977 are separated by 468 nucleotides Shewana3_0977 and Shewana3_0978 are separated by 91 nucleotides
Shewana3_0975: Shewana3_0975 - hypothetical protein (RefSeq), at 1,145,808 to 1,146,689
_0975
Shewana3_0976: Shewana3_0976 - putative lipoprotein (RefSeq), at 1,146,768 to 1,147,220
_0976
Shewana3_0977: Shewana3_0977 - SAM-dependent methyltransferase (RefSeq), at 1,147,689 to 1,148,879
_0977
Shewana3_0978: Shewana3_0978 - ribose-5-phosphate isomerase A (RefSeq), at 1,148,971 to 1,149,630
_0978
Position (kb)
1147
1148
1149 Strain fitness (log2 ratio)
-1
0
1 at 1146.698 kb on - strand at 1146.698 kb on - strand at 1146.856 kb on - strand, within Shewana3_0976 at 1146.866 kb on - strand, within Shewana3_0976 at 1146.866 kb on - strand, within Shewana3_0976 at 1146.890 kb on - strand, within Shewana3_0976 at 1146.993 kb on - strand, within Shewana3_0976 at 1146.994 kb on + strand, within Shewana3_0976 at 1147.044 kb on - strand, within Shewana3_0976 at 1147.096 kb on - strand, within Shewana3_0976 at 1147.125 kb on + strand, within Shewana3_0976 at 1147.181 kb on + strand at 1147.783 kb on - strand at 1148.078 kb on - strand, within Shewana3_0977 at 1148.198 kb on - strand, within Shewana3_0977 at 1148.310 kb on - strand, within Shewana3_0977 at 1148.310 kb on - strand, within Shewana3_0977 at 1148.453 kb on + strand, within Shewana3_0977 at 1148.720 kb on - strand, within Shewana3_0977 at 1148.850 kb on + strand at 1148.890 kb on + strand at 1148.991 kb on - strand at 1149.757 kb on - strand at 1149.757 kb on - strand at 1149.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,146,698 - +0.4 1,146,698 - -0.8 1,146,856 - Shewana3_0976 0.19 -0.3 1,146,866 - Shewana3_0976 0.22 -0.4 1,146,866 - Shewana3_0976 0.22 +1.5 1,146,890 - Shewana3_0976 0.27 +0.5 1,146,993 - Shewana3_0976 0.50 -0.7 1,146,994 + Shewana3_0976 0.50 +0.0 1,147,044 - Shewana3_0976 0.61 -0.5 1,147,096 - Shewana3_0976 0.72 +0.6 1,147,125 + Shewana3_0976 0.79 -0.1 1,147,181 + +0.2 1,147,783 - +1.3 1,148,078 - Shewana3_0977 0.33 +0.2 1,148,198 - Shewana3_0977 0.43 +0.9 1,148,310 - Shewana3_0977 0.52 -0.3 1,148,310 - Shewana3_0977 0.52 -1.1 1,148,453 + Shewana3_0977 0.64 +0.1 1,148,720 - Shewana3_0977 0.87 -0.3 1,148,850 + +0.6 1,148,890 + +0.8 1,148,991 - +1.2 1,149,757 - +1.2 1,149,757 - -1.7 1,149,852 + -0.9
Or see this region's nucleotide sequence