Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0962 and Shewana3_0963 are separated by 132 nucleotides Shewana3_0963 and Shewana3_0964 are separated by 124 nucleotides Shewana3_0964 and Shewana3_0965 are separated by 192 nucleotides Shewana3_0965 and Shewana3_0966 are separated by 72 nucleotides
Shewana3_0962: Shewana3_0962 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,129,361 to 1,130,692
_0962
Shewana3_0963: Shewana3_0963 - GCN5-related N-acetyltransferase (RefSeq), at 1,130,825 to 1,131,418
_0963
Shewana3_0964: Shewana3_0964 - peptidase M48, Ste24p (RefSeq), at 1,131,543 to 1,132,352
_0964
Shewana3_0965: Shewana3_0965 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 1,132,545 to 1,133,162
_0965
Shewana3_0966: Shewana3_0966 - dihydrodipicolinate reductase (RefSeq), at 1,133,235 to 1,134,047
_0966
Position (kb)
1131
1132
1133 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1130.649 kb on + strand at 1130.657 kb on - strand at 1130.664 kb on + strand at 1130.734 kb on + strand at 1130.792 kb on + strand at 1130.792 kb on + strand at 1130.800 kb on - strand at 1130.836 kb on - strand at 1131.185 kb on + strand, within Shewana3_0963 at 1131.205 kb on - strand, within Shewana3_0963 at 1131.213 kb on + strand, within Shewana3_0963 at 1131.379 kb on + strand at 1131.766 kb on + strand, within Shewana3_0964 at 1131.771 kb on + strand, within Shewana3_0964 at 1131.854 kb on + strand, within Shewana3_0964 at 1131.952 kb on + strand, within Shewana3_0964 at 1132.029 kb on + strand, within Shewana3_0964 at 1132.029 kb on + strand, within Shewana3_0964 at 1132.107 kb on + strand, within Shewana3_0964 at 1132.115 kb on - strand, within Shewana3_0964 at 1132.117 kb on + strand, within Shewana3_0964 at 1132.140 kb on - strand, within Shewana3_0964 at 1132.174 kb on + strand, within Shewana3_0964 at 1132.745 kb on + strand, within Shewana3_0965 at 1132.760 kb on + strand, within Shewana3_0965 at 1132.827 kb on + strand, within Shewana3_0965 at 1132.955 kb on - strand, within Shewana3_0965 at 1132.957 kb on + strand, within Shewana3_0965 at 1133.049 kb on + strand, within Shewana3_0965 at 1133.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,130,649 + +0.1 1,130,657 - -1.1 1,130,664 + +0.2 1,130,734 + -0.7 1,130,792 + +0.4 1,130,792 + -0.3 1,130,800 - -1.1 1,130,836 - -0.4 1,131,185 + Shewana3_0963 0.61 +1.8 1,131,205 - Shewana3_0963 0.64 -1.9 1,131,213 + Shewana3_0963 0.65 -0.9 1,131,379 + -0.8 1,131,766 + Shewana3_0964 0.28 -1.7 1,131,771 + Shewana3_0964 0.28 +0.6 1,131,854 + Shewana3_0964 0.38 +0.2 1,131,952 + Shewana3_0964 0.50 +0.3 1,132,029 + Shewana3_0964 0.60 -0.6 1,132,029 + Shewana3_0964 0.60 +0.9 1,132,107 + Shewana3_0964 0.70 +1.9 1,132,115 - Shewana3_0964 0.71 +0.4 1,132,117 + Shewana3_0964 0.71 +0.5 1,132,140 - Shewana3_0964 0.74 -2.0 1,132,174 + Shewana3_0964 0.78 +2.4 1,132,745 + Shewana3_0965 0.32 +0.1 1,132,760 + Shewana3_0965 0.35 -0.2 1,132,827 + Shewana3_0965 0.46 +0.8 1,132,955 - Shewana3_0965 0.66 +2.0 1,132,957 + Shewana3_0965 0.67 +2.2 1,133,049 + Shewana3_0965 0.82 +0.9 1,133,218 + +0.1
Or see this region's nucleotide sequence