Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0956 and Shewana3_0957 are separated by 124 nucleotides Shewana3_0957 and Shewana3_0958 are separated by 129 nucleotides Shewana3_0958 and dnaK are separated by 285 nucleotides
Shewana3_0956: Shewana3_0956 - hypothetical protein (RefSeq), at 1,121,973 to 1,122,275
_0956
Shewana3_0957: Shewana3_0957 - ybaK/ebsC protein (RefSeq), at 1,122,400 to 1,122,876
_0957
Shewana3_0958: Shewana3_0958 - hypothetical protein (RefSeq), at 1,123,006 to 1,123,926
_0958
Shewana3_0959: dnaK - molecular chaperone DnaK (RefSeq), at 1,124,212 to 1,126,131
dnaK
Position (kb)
1123
1124 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1122.063 kb on - strand, within Shewana3_0956 at 1122.063 kb on - strand, within Shewana3_0956 at 1122.090 kb on + strand, within Shewana3_0956 at 1122.113 kb on + strand, within Shewana3_0956 at 1122.113 kb on + strand, within Shewana3_0956 at 1122.113 kb on + strand, within Shewana3_0956 at 1122.115 kb on + strand, within Shewana3_0956 at 1122.121 kb on - strand, within Shewana3_0956 at 1122.148 kb on + strand, within Shewana3_0956 at 1122.187 kb on + strand, within Shewana3_0956 at 1122.207 kb on + strand, within Shewana3_0956 at 1122.348 kb on - strand at 1122.414 kb on - strand at 1122.474 kb on - strand, within Shewana3_0957 at 1122.800 kb on - strand, within Shewana3_0957 at 1123.093 kb on + strand at 1123.197 kb on - strand, within Shewana3_0958 at 1123.248 kb on - strand, within Shewana3_0958 at 1123.266 kb on + strand, within Shewana3_0958 at 1123.293 kb on + strand, within Shewana3_0958 at 1123.316 kb on - strand, within Shewana3_0958 at 1123.324 kb on - strand, within Shewana3_0958 at 1123.326 kb on + strand, within Shewana3_0958 at 1123.433 kb on + strand, within Shewana3_0958 at 1123.523 kb on - strand, within Shewana3_0958 at 1123.652 kb on - strand, within Shewana3_0958 at 1123.655 kb on + strand, within Shewana3_0958 at 1123.663 kb on - strand, within Shewana3_0958 at 1123.685 kb on + strand, within Shewana3_0958 at 1123.765 kb on + strand, within Shewana3_0958 at 1123.803 kb on - strand, within Shewana3_0958 at 1123.884 kb on - strand at 1123.928 kb on + strand at 1123.975 kb on - strand at 1124.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,122,063 - Shewana3_0956 0.30 +2.4 1,122,063 - Shewana3_0956 0.30 -1.3 1,122,090 + Shewana3_0956 0.39 -0.6 1,122,113 + Shewana3_0956 0.46 +1.0 1,122,113 + Shewana3_0956 0.46 -1.0 1,122,113 + Shewana3_0956 0.46 -0.8 1,122,115 + Shewana3_0956 0.47 -1.6 1,122,121 - Shewana3_0956 0.49 +0.8 1,122,148 + Shewana3_0956 0.58 +1.0 1,122,187 + Shewana3_0956 0.71 -2.4 1,122,207 + Shewana3_0956 0.77 -1.1 1,122,348 - -1.4 1,122,414 - -2.5 1,122,474 - Shewana3_0957 0.16 +2.1 1,122,800 - Shewana3_0957 0.84 -1.0 1,123,093 + +0.9 1,123,197 - Shewana3_0958 0.21 -0.9 1,123,248 - Shewana3_0958 0.26 +2.2 1,123,266 + Shewana3_0958 0.28 +1.4 1,123,293 + Shewana3_0958 0.31 +0.2 1,123,316 - Shewana3_0958 0.34 -0.6 1,123,324 - Shewana3_0958 0.35 -1.0 1,123,326 + Shewana3_0958 0.35 +1.0 1,123,433 + Shewana3_0958 0.46 -0.5 1,123,523 - Shewana3_0958 0.56 -0.3 1,123,652 - Shewana3_0958 0.70 -1.2 1,123,655 + Shewana3_0958 0.70 +1.4 1,123,663 - Shewana3_0958 0.71 -0.8 1,123,685 + Shewana3_0958 0.74 -0.6 1,123,765 + Shewana3_0958 0.82 -0.7 1,123,803 - Shewana3_0958 0.87 -1.3 1,123,884 - -0.5 1,123,928 + +0.8 1,123,975 - -1.6 1,124,118 - +1.6
Or see this region's nucleotide sequence