Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0883 and Shewana3_0884 are separated by 4 nucleotides Shewana3_0884 and Shewana3_0885 are separated by 120 nucleotides Shewana3_0885 and Shewana3_0886 overlap by 1 nucleotides
Shewana3_0883: Shewana3_0883 - hypothetical protein (RefSeq), at 1,029,272 to 1,030,096
_0883
Shewana3_0884: Shewana3_0884 - LysR family transcriptional regulator (RefSeq), at 1,030,101 to 1,030,991
_0884
Shewana3_0885: Shewana3_0885 - LrgA family protein (RefSeq), at 1,031,112 to 1,031,546
_0885
Shewana3_0886: Shewana3_0886 - LrgB family protein (RefSeq), at 1,031,546 to 1,032,280
_0886
Position (kb)
1030
1031 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1029.352 kb on + strand at 1029.413 kb on - strand, within Shewana3_0883 at 1029.619 kb on + strand, within Shewana3_0883 at 1029.621 kb on - strand, within Shewana3_0883 at 1029.705 kb on + strand, within Shewana3_0883 at 1029.755 kb on + strand, within Shewana3_0883 at 1029.768 kb on + strand, within Shewana3_0883 at 1029.803 kb on + strand, within Shewana3_0883 at 1029.810 kb on + strand, within Shewana3_0883 at 1030.033 kb on - strand at 1030.063 kb on - strand at 1030.155 kb on + strand at 1030.155 kb on + strand at 1030.251 kb on - strand, within Shewana3_0884 at 1030.316 kb on + strand, within Shewana3_0884 at 1030.423 kb on - strand, within Shewana3_0884 at 1030.587 kb on + strand, within Shewana3_0884 at 1030.595 kb on - strand, within Shewana3_0884 at 1030.736 kb on - strand, within Shewana3_0884 at 1030.776 kb on + strand, within Shewana3_0884 at 1030.784 kb on - strand, within Shewana3_0884 at 1030.816 kb on + strand, within Shewana3_0884 at 1030.888 kb on + strand, within Shewana3_0884 at 1030.888 kb on + strand, within Shewana3_0884 at 1030.888 kb on + strand, within Shewana3_0884 at 1030.896 kb on - strand, within Shewana3_0884 at 1030.896 kb on - strand, within Shewana3_0884 at 1031.074 kb on - strand at 1031.180 kb on + strand, within Shewana3_0885 at 1031.226 kb on + strand, within Shewana3_0885 at 1031.247 kb on + strand, within Shewana3_0885 at 1031.425 kb on + strand, within Shewana3_0885 at 1031.561 kb on - strand at 1031.678 kb on + strand, within Shewana3_0886 at 1031.879 kb on - strand, within Shewana3_0886
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,029,352 + -1.4 1,029,413 - Shewana3_0883 0.17 +0.3 1,029,619 + Shewana3_0883 0.42 -0.8 1,029,621 - Shewana3_0883 0.42 -0.6 1,029,705 + Shewana3_0883 0.52 +0.0 1,029,755 + Shewana3_0883 0.59 +1.6 1,029,768 + Shewana3_0883 0.60 +0.1 1,029,803 + Shewana3_0883 0.64 -0.1 1,029,810 + Shewana3_0883 0.65 +0.7 1,030,033 - -0.4 1,030,063 - -0.7 1,030,155 + -0.8 1,030,155 + -0.3 1,030,251 - Shewana3_0884 0.17 +1.1 1,030,316 + Shewana3_0884 0.24 -1.8 1,030,423 - Shewana3_0884 0.36 -0.1 1,030,587 + Shewana3_0884 0.55 -0.3 1,030,595 - Shewana3_0884 0.55 +0.4 1,030,736 - Shewana3_0884 0.71 +0.8 1,030,776 + Shewana3_0884 0.76 -0.6 1,030,784 - Shewana3_0884 0.77 +0.8 1,030,816 + Shewana3_0884 0.80 -1.7 1,030,888 + Shewana3_0884 0.88 -0.1 1,030,888 + Shewana3_0884 0.88 +3.3 1,030,888 + Shewana3_0884 0.88 -0.7 1,030,896 - Shewana3_0884 0.89 +1.4 1,030,896 - Shewana3_0884 0.89 +0.1 1,031,074 - -0.2 1,031,180 + Shewana3_0885 0.16 +0.1 1,031,226 + Shewana3_0885 0.26 -1.2 1,031,247 + Shewana3_0885 0.31 +1.0 1,031,425 + Shewana3_0885 0.72 -0.2 1,031,561 - +1.2 1,031,678 + Shewana3_0886 0.18 +1.8 1,031,879 - Shewana3_0886 0.45 -1.4
Or see this region's nucleotide sequence